genome.fa.s7910.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007910.1 Hibiscus syriacus cultivar Beakdansim tig00110306_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  704475

Tables:   1   2   3   4   

This is table  2  of  4  ( 400 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249465--249494	9	3.3	9	90	0	51	13	30	30	26	1.94
249516--249684	28	5.9	29	80	7	184	36	4	12	47	1.61
249516--249681	87	1.9	85	86	2	233	36	4	10	48	1.58
256842--256887	18	2.6	18	89	0	74	21	50	19	8	1.75
256888--257105	29	7.6	29	85	5	255	33	2	14	48	1.58
256894--257105	85	2.4	85	85	5	273	34	2	13	49	1.57
256902--257113	59	3.7	59	82	3	159	35	2	13	49	1.55
270511--270544	16	2.1	16	89	10	52	5	23	8	61	1.47
271901--272075	82	2.2	81	84	4	219	26	10	21	41	1.85
272973--273220	57	4.3	56	74	12	189	36	7	13	42	1.72
276645--276686	19	2.2	19	83	8	50	21	9	16	52	1.72
286945--286995	27	1.9	27	96	4	95	15	3	27	52	1.60
286946--287005	26	2.3	27	88	8	88	18	3	26	51	1.61
290361--290401	21	1.9	22	85	5	57	46	0	17	36	1.48
296001--296110	56	1.9	57	94	1	195	35	15	20	29	1.93
298331--298362	16	2.0	16	100	0	64	50	18	18	12	1.78
299277--299831	84	6.7	83	76	5	532	29	25	20	24	1.99
299277--299831	248	2.2	247	88	1	799	29	25	20	24	1.99
300484--300671	37	5.1	36	73	17	122	47	4	7	39	1.54
300541--300782	35	6.6	36	73	15	135	45	3	6	44	1.47
300541--300736	39	5.3	36	75	12	123	45	3	7	43	1.50
301854--301920	26	2.6	26	95	0	125	32	20	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302076--302117	4	10.5	4	84	0	57	26	4	0	69	1.08
302185--302242	24	2.5	21	77	20	62	15	5	5	74	1.18
302400--302459	10	5.2	11	71	16	50	26	0	5	68	1.10
302844--302989	35	4.0	35	78	9	114	47	4	7	40	1.51
302889--303037	35	4.1	36	75	9	126	45	5	8	40	1.58
302900--303019	37	3.2	36	78	9	118	46	5	7	40	1.54
302888--303031	74	2.0	71	82	8	173	45	4	8	41	1.56
303003--303061	24	2.5	24	100	0	118	42	5	11	40	1.64
304218--304284	26	2.6	26	80	0	89	32	19	22	25	1.97
304441--304480	4	10.0	4	88	0	62	25	5	0	70	1.08
305219--305502	35	7.4	37	74	14	170	44	4	8	42	1.55
305263--305442	74	2.5	72	80	8	195	45	3	8	41	1.54
305561--305598	6	6.5	6	81	6	51	18	0	0	81	0.69
305563--305604	16	2.5	17	92	3	68	19	0	0	80	0.70
306952--307157	76	2.7	73	76	12	177	46	4	6	42	1.50
307203--307240	6	6.5	6	81	6	51	18	0	0	81	0.69
307205--307246	16	2.5	17	92	3	68	19	0	0	80	0.70
308185--308209	9	2.8	9	100	0	50	0	56	0	44	0.99
308280--308346	26	2.6	26	92	0	107	31	17	20	29	1.96
308503--308544	4	10.5	4	84	0	57	26	4	0	69	1.08
308672--308707	16	2.2	17	90	9	58	30	5	0	63	1.17
308641--308696	24	2.4	22	78	18	60	25	3	0	71	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309340--309424	37	2.3	34	73	23	82	43	3	7	45	1.48
309320--309419	39	2.5	42	85	9	136	45	3	7	45	1.46
309413--309513	37	2.8	34	81	10	112	47	2	8	40	1.50
310924--310958	4	8.8	4	87	0	52	25	5	0	68	1.11
310919--310958	20	2.0	20	100	0	80	25	10	0	65	1.24
311367--311547	74	2.5	71	76	11	177	45	3	8	42	1.52
311549--311650	33	3.0	33	74	18	93	40	0	4	53	1.29
313065--313104	3	13.3	3	100	0	80	35	0	0	65	0.93
313685--313733	2	25.0	2	95	4	91	51	0	0	48	1.00
313741--313839	41	2.4	42	83	8	123	46	2	8	43	1.44
313742--313839	39	2.4	40	80	11	110	46	2	8	42	1.45
313797--313939	74	1.9	73	80	9	166	46	3	8	41	1.51
313817--314037	35	6.1	34	71	19	128	45	3	8	42	1.49
313991--314025	13	2.6	13	90	4	52	48	0	0	51	1.00
314087--314125	12	3.2	12	89	7	60	20	0	0	79	0.73
314087--314125	13	3.2	13	92	7	64	20	0	0	79	0.73
315067--315096	12	2.5	12	100	0	60	0	56	0	43	0.99
315470--315537	27	2.7	24	84	6	82	17	4	2	75	1.10
315471--315554	24	3.4	25	80	9	75	20	4	2	72	1.14
315585--315618	18	1.9	18	88	5	52	14	14	0	70	1.17
315673--315731	23	2.6	22	76	12	57	23	0	8	67	1.17
320781--321337	164	3.4	163	81	5	555	30	25	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320804--321337	248	2.2	249	90	1	831	30	25	19	24	1.98
320804--321337	84	6.4	83	79	4	558	30	25	19	24	1.98
321983--322153	34	4.8	34	72	17	100	46	4	7	41	1.51
322106--322281	76	2.4	71	76	12	171	44	2	5	47	1.41
323542--323575	4	8.5	4	86	0	50	23	5	0	70	1.09
323546--323593	16	3.1	15	82	11	53	18	8	2	70	1.22
326520--326593	30	2.5	29	84	6	94	35	21	20	22	1.96
328620--328684	30	2.2	30	88	0	94	20	32	15	32	1.93
329095--329508	212	2.0	211	88	1	623	33	16	8	40	1.79
329965--329998	18	1.9	17	88	5	50	32	0	2	64	1.08
331856--331909	19	2.8	19	84	13	67	27	3	0	68	1.06
332038--332089	5	10.4	5	76	15	54	21	0	3	75	0.97
332030--332141	7	16.4	7	67	12	63	29	0	3	66	1.08
332043--332115	26	3.2	22	86	9	85	26	0	4	69	1.06
332030--332100	26	2.7	27	95	4	135	23	0	2	73	0.97
339249--339304	25	2.3	25	96	3	105	48	0	17	33	1.48
340390--340436	21	2.2	21	88	0	67	23	23	14	38	1.92
341112--341162	19	2.6	20	90	3	77	43	5	13	37	1.69
346597--346646	13	4.1	12	73	21	50	76	0	4	20	0.95
346597--346646	18	2.7	18	84	9	66	76	0	4	20	0.95
348134--348223	3	30.3	3	78	10	87	34	3	2	60	1.26
348126--348223	17	5.9	17	81	11	105	34	4	2	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349163--349194	11	2.9	11	100	0	64	18	6	0	75	1.01
349162--349194	16	2.1	16	88	11	50	21	6	0	72	1.05
350604--350696	46	2.0	47	83	6	118	36	12	20	30	1.90
352011--352060	21	2.4	21	86	0	73	16	22	18	44	1.87
355490--355528	21	1.9	20	89	5	60	10	10	0	79	0.94
356348--356398	13	4.2	12	74	20	52	76	0	3	19	0.94
356348--356398	18	2.8	18	85	8	68	76	0	3	19	0.94
357757--357815	8	6.5	8	78	21	55	37	1	1	59	1.18
357757--357809	19	2.8	18	80	11	61	37	1	1	58	1.20
360195--360287	46	2.0	47	87	6	136	36	12	20	30	1.90
366451--366504	20	2.7	20	85	0	63	24	24	24	27	2.00
366347--366856	119	4.3	119	92	0	831	30	15	19	33	1.94
366817--366921	20	5.2	20	91	0	165	25	23	20	29	1.99
367065--367140	3	25.3	3	80	12	77	38	2	0	59	1.12
367068--367138	14	4.9	15	78	21	73	39	2	0	57	1.13
367065--367140	17	4.2	17	84	12	98	38	2	0	59	1.12
367071--367133	11	5.7	11	79	20	62	39	3	0	57	1.15
371457--371486	14	2.1	14	100	0	60	26	30	6	36	1.82
370376--371774	699	2.0	695	84	4	1824	38	16	11	33	1.84
375285--375338	23	2.3	23	83	6	63	38	3	3	53	1.36
380250--380390	37	3.9	36	79	6	144	30	14	12	41	1.84
380725--380791	29	2.3	30	82	7	75	35	22	11	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380771--380864	37	2.6	35	83	11	118	24	18	14	42	1.88
380794--380866	37	2.0	37	94	0	128	26	19	12	42	1.86
380938--381288	130	2.7	132	78	7	336	28	31	16	23	1.96
381475--381516	3	14.0	3	84	0	57	30	0	2	66	1.04
381475--381516	15	2.8	15	92	0	66	30	0	2	66	1.04
382655--382717	31	2.0	32	84	3	83	22	9	12	55	1.65
383709--383762	26	2.2	26	86	6	76	35	0	9	55	1.32
387991--388015	13	1.9	13	100	0	50	16	12	0	72	1.13
390607--390633	14	1.9	14	100	0	54	22	18	29	29	1.97
392122--392164	18	2.4	18	96	0	77	51	9	27	11	1.69

Tables:   1   2   3   4