Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007910.1 Hibiscus syriacus cultivar Beakdansim tig00110306_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  704475

Tables:   1   2   3   4   

This is table  4  of  4  ( 400 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
667334--667373
21
1.9
21
89
0
62
22
12
5
60
1.52
673758--673858
37
2.7
37
76
18
102
55
0
0
43
1.06
673788--673849
14
4.6
14
76
8
65
59
0
0
40
0.97
673688--673830
65
2.2
65
78
3
146
51
2
0
44
1.21
675210--675261
18
3.0
17
86
11
70
40
5
1
51
1.37
675245--675307
5
13.2
5
74
15
53
57
1
0
41
1.08
675273--675307
18
1.9
18
88
0
52
62
0
0
37
0.95
675245--675353
39
2.8
40
75
9
107
55
3
0
39
1.24
676257--676471
6
33.7
6
89
6
261
60
0
39
0
0.97
676257--676471
9
22.4
9
89
6
261
60
0
39
0
0.97
676257--676471
15
13.5
15
89
7
261
60
0
39
0
0.97
676375--676459
2
46.5
2
82
17
114
50
0
49
0
1.00
676375--676454
13
6.5
13
88
9
116
50
0
50
0
1.00
677139--677170
15
2.3
15
89
10
50
40
0
21
37
1.54
678476--678513
16
2.3
17
86
13
53
23
10
7
57
1.58
679550--679622
20
3.6
20
81
7
94
32
20
24
21
1.97
679677--679730
19
2.7
20
94
5
92
20
20
37
22
1.95
679810--679869
29
2.0
29
87
6
84
41
16
5
36
1.70
681087--681134
19
2.5
20
82
3
62
29
12
6
52
1.63
681778--681831
23
2.3
23
96
0
99
25
7
38
27
1.83
682003--682071
32
2.1
33
86
2
95
23
28
15
31
1.95
682427--682500
20
3.7
20
82
7
87
32
22
22
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
682521--682577
22
2.8
19
78
17
69
21
21
33
24
1.97
682535--682577
22
1.9
23
90
4
70
20
20
32
25
1.97
682655--682714
29
2.0
31
83
6
79
43
16
5
35
1.70
683773--683797
7
3.6
7
100
0
50
64
24
0
12
1.27
685334--685395
30
2.0
32
87
6
92
35
19
1
43
1.61
686921--686957
19
2.1
18
90
10
58
37
10
5
45
1.62
687232--687297
18
3.7
18
97
0
123
31
24
22
21
1.98
695337--695363
13
2.1
13
100
0
54
40
7
7
44
1.60
695454--695480
13
2.1
13
100
0
54
37
0
14
48
1.45
695481--695516
17
2.2
16
90
9
56
36
11
5
47
1.63
696562--696933
175
2.1
176
94
1
649
37
6
13
42
1.71
696899--697013
24
4.8
24
79
6
126
58
15
10
15
1.63
696931--696967
14
2.6
14
100
0
74
64
18
8
8
1.45
696959--697006
10
4.4
10
80
19
60
56
12
14
16
1.68
696917--696991
38
2.0
38
89
0
114
61
16
9
13
1.56
696931--697013
14
6.5
13
75
20
61
59
15
12
13
1.62
702755--702809
19
3.0
18
82
17
69
0
18
1
80
0.81
702755--702807
14
4.2
12
80
17
54
0
18
1
79
0.83

Tables:   1   2   3   4

The End!