genome.fa.s7927.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007927.1 Hibiscus syriacus cultivar Beakdansim tig00110333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  706544

Tables:   1   2   3   4   

This is table  2  of  4  ( 369 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286767--287281	52	9.8	53	91	3	169	29	17	25	27	1.97
287468--287547	3	26.7	3	82	9	83	40	0	1	58	1.06
293850--293920	35	2.0	35	94	0	124	45	7	23	23	1.78
297777--297842	29	2.2	31	83	5	82	53	3	10	33	1.51
299123--299186	31	2.1	31	84	0	83	51	9	7	31	1.62
304139--304191	21	2.5	21	100	0	106	35	15	11	37	1.83
304730--304769	2	20.0	2	100	0	80	50	0	0	50	1.00
305535--305576	21	2.0	20	86	4	57	38	14	7	40	1.73
310137--310178	21	2.0	20	86	4	57	38	14	7	40	1.73
312340--312459	42	2.9	42	96	0	222	16	20	18	44	1.87
312672--312753	23	3.2	23	68	25	58	47	1	1	50	1.16
312658--312736	30	2.6	31	79	15	78	49	1	0	49	1.09
312823--312866	23	2.0	23	81	4	54	54	2	2	40	1.25
312985--313054	20	3.5	20	94	0	122	35	12	10	41	1.77
312985--313063	40	2.0	40	89	0	122	35	13	8	41	1.76
313037--313118	15	5.5	15	88	2	121	35	19	7	37	1.80
313037--313118	30	2.8	30	94	1	139	35	19	7	37	1.80
313037--313123	45	2.0	44	93	2	147	33	19	6	40	1.78
313412--313440	5	5.8	5	100	0	58	20	58	0	20	1.39
318489--318578	41	2.2	41	78	7	94	23	1	31	44	1.61
318849--318949	33	3.1	33	97	0	184	21	26	9	41	1.84
321058--321127	33	2.1	34	89	2	106	48	14	10	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324084--324121	17	2.3	17	86	4	51	42	0	2	55	1.14
328723--328766	22	2.0	22	82	8	54	45	2	0	52	1.13
328722--328769	21	2.2	21	79	13	53	41	2	0	56	1.11
330653--330697	23	2.0	23	82	8	56	33	8	0	57	1.30
331353--331404	23	2.3	22	81	15	61	51	1	30	15	1.54
333453--333497	18	2.6	17	86	6	63	33	2	0	64	1.06
333587--333633	23	2.0	23	87	0	67	29	14	17	38	1.89
338544--338596	20	2.7	19	82	5	70	64	15	18	1	1.38
340675--340701	2	13.5	2	100	0	54	51	0	48	0	1.00
344602--344648	22	2.1	22	84	7	60	59	0	0	40	0.97
346479--346543	27	2.3	30	82	12	75	36	4	3	55	1.36
347091--347135	20	2.2	20	92	0	72	26	24	11	37	1.89
348333--348412	39	2.0	40	85	4	108	35	20	16	28	1.94
349460--349514	23	2.4	22	85	8	74	20	20	12	47	1.82
350638--350782	77	1.9	77	85	0	200	40	9	15	34	1.81
350739--350841	40	2.6	40	92	0	161	33	13	18	34	1.90
350684--350916	117	2.0	117	82	1	279	36	12	15	36	1.84
350828--351050	77	2.9	76	79	6	218	36	9	17	35	1.84
351325--351683	100	3.6	101	85	2	454	40	10	13	34	1.80
351909--352152	77	3.3	74	74	10	207	36	10	6	47	1.63
352358--352391	2	17.0	2	93	0	59	50	0	2	47	1.16
352358--352424	22	3.1	22	83	12	70	41	4	5	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354139--354177	9	4.4	9	93	6	71	56	23	0	20	1.42
354143--354176	17	2.0	17	100	0	68	58	17	0	23	1.38
356455--356506	23	2.4	22	80	6	70	19	19	40	21	1.92
360324--360363	21	1.9	21	85	10	55	35	10	2	52	1.48
368670--368699	15	2.0	15	100	0	60	20	33	20	26	1.97
371925--371966	20	2.2	19	83	12	50	50	0	2	47	1.14
374736--374781	19	2.6	17	81	15	58	56	0	2	41	1.11
374721--374780	19	3.3	19	77	11	54	61	0	1	36	1.06
374750--374939	21	9.0	21	69	16	65	57	1	0	40	1.12
374775--374930	63	2.5	64	92	5	257	57	1	0	40	1.10
374775--374934	12	12.8	12	68	21	80	57	1	0	40	1.09
374830--374911	24	3.2	26	81	13	100	56	1	0	42	1.07
374892--374942	12	4.3	12	76	18	54	66	1	0	31	1.03
375665--375722	29	2.1	28	81	15	68	44	13	17	24	1.85
375793--375856	24	2.5	24	87	10	83	28	17	15	39	1.90
377102--377133	2	16.0	2	100	0	64	50	0	0	50	1.00
385265--385322	21	2.8	20	82	10	62	50	22	0	27	1.50
387011--387052	17	2.4	18	84	15	70	23	0	11	64	1.27
388575--388631	29	1.9	30	83	16	75	54	5	3	36	1.40
392307--392403	48	2.0	48	86	4	133	48	12	19	19	1.80
394595--394785	30	6.4	29	81	1	150	22	23	16	37	1.94
394588--394706	60	2.0	60	89	0	184	20	23	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394595--394766	90	1.9	90	84	7	233	23	22	17	37	1.94
394612--394775	60	2.7	59	83	1	175	23	23	15	37	1.93
394597--394785	90	2.1	90	82	8	226	22	23	16	36	1.94
402175--402285	53	2.1	52	84	1	141	45	15	11	27	1.81
406947--406990	21	2.1	21	87	4	63	38	15	0	45	1.47
408231--408257	2	13.5	2	100	0	54	51	0	0	48	1.00
408747--408834	32	2.8	30	73	14	81	32	17	17	32	1.93
409048--409101	16	3.2	17	80	17	51	48	3	16	31	1.64
418906--418939	16	2.1	16	100	0	68	29	11	5	52	1.61
421516--421905	192	2.0	192	90	3	606	26	13	13	46	1.80
424581--424626	2	23.0	2	90	0	74	50	0	45	4	1.21
435072--435107	2	18.0	2	100	0	72	50	0	0	50	1.00
437020--437088	19	3.6	19	98	0	129	26	18	30	24	1.98
437019--437133	38	2.9	38	80	11	131	29	19	26	24	1.98
437746--437790	23	2.0	23	81	0	54	22	26	24	26	2.00
438483--438549	30	2.2	30	84	5	82	43	14	11	29	1.82
442710--442801	31	3.0	31	88	0	121	19	9	16	54	1.69
442961--443038	31	2.5	31	89	0	120	24	7	14	53	1.66
444944--444972	2	14.5	2	100	0	58	0	48	0	51	1.00
451179--451211	16	2.1	16	94	0	57	42	18	21	18	1.89
459767--459968	42	4.7	42	74	10	144	53	4	17	24	1.61
461580--461626	15	3.2	15	78	3	51	68	10	2	19	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465079--465124	12	4.2	12	84	13	55	47	0	2	50	1.13
465353--465412	19	3.1	19	72	11	59	38	25	13	23	1.91
465446--465585	19	7.0	21	90	4	188	35	22	10	31	1.88
465459--465577	19	6.1	19	95	3	193	35	22	10	31	1.89
466511--466556	24	1.9	24	86	0	65	28	19	19	32	1.96
466510--466563	24	2.2	24	80	0	63	25	16	18	38	1.92
466739--466765	3	9.0	3	100	0	54	66	0	33	0	0.92
469345--469462	37	3.5	35	71	21	108	51	14	2	31	1.55
469333--469492	64	2.5	64	89	5	259	52	15	2	30	1.55
470875--470942	21	3.2	21	78	12	84	20	19	35	25	1.96
470853--470942	43	2.1	43	87	2	128	22	18	35	23	1.96
471253--471301	21	2.3	21	82	0	62	30	32	20	16	1.94
471287--471426	63	2.2	63	81	5	158	29	35	14	20	1.92
473126--473168	20	2.2	20	82	0	50	13	16	20	48	1.80
473486--473545	26	2.3	26	97	0	111	33	10	35	21	1.87
473676--473714	20	2.0	20	100	0	78	12	15	25	46	1.81
473731--473771	21	2.0	21	90	0	64	41	14	21	21	1.89
475879--475964	31	2.8	30	79	10	84	41	2	6	48	1.43
477115--477213	21	4.8	20	72	6	72	36	23	19	21	1.95
477181--477409	20	11.4	20	81	5	230	37	25	17	19	1.94
478100--478146	24	2.0	24	87	8	69	25	14	21	38	1.92
478321--478345	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479500--479606	19	5.7	20	77	15	104	46	18	23	11	1.81
479498--479562	21	3.1	21	82	4	96	47	15	26	10	1.78
479607--479686	33	2.4	33	87	0	106	11	18	22	47	1.80
479665--479740	21	3.6	21	78	7	91	13	21	17	48	1.80
479820--479890	33	2.2	33	92	0	115	47	15	23	12	1.80
480270--480462	20	9.6	20	82	5	219	19	18	26	35	1.94
480491--480548	21	2.8	21	97	0	107	22	18	22	36	1.95
485278--485351	37	2.0	37	91	0	121	45	8	8	37	1.63
490553--490643	2	45.5	2	100	0	182	50	0	0	49	1.00
491125--491321	27	7.3	27	90	2	243	20	47	16	15	1.83

Tables:   1   2   3   4