genome.fa.s7937.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007937.1 Hibiscus syriacus cultivar Beakdansim tig00110347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  820613

Tables:   1   2   3   4   

This is table  3  of  4  ( 421 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487510--488521	229	4.4	229	90	2	1434	37	14	17	30	1.90
487905--487949	24	1.9	23	82	13	56	51	6	24	17	1.70
488131--488175	24	1.9	23	82	13	56	48	6	26	17	1.72
488767--488811	3	15.0	3	90	0	63	40	0	0	60	0.97
488772--488811	15	2.7	15	96	0	71	42	0	0	57	0.98
491569--491620	27	1.9	28	85	14	74	32	5	13	48	1.66
498601--498688	31	2.9	31	86	1	115	48	3	3	44	1.36
501488--501526	21	1.9	20	89	5	60	35	5	12	46	1.65
511927--512031	22	5.0	21	72	19	69	36	0	1	60	1.14
512009--512067	24	2.3	24	80	8	64	50	1	1	45	1.21
513000--513107	47	2.5	42	77	18	114	52	3	7	36	1.47
519573--519684	14	8.0	14	69	8	50	17	13	9	58	1.61
524295--524352	20	2.7	20	81	10	62	25	24	20	29	1.99
528869--529011	75	1.9	75	82	2	180	33	18	18	29	1.95
529914--530073	54	3.0	53	84	5	214	36	16	21	25	1.94
531154--531344	45	4.3	45	94	1	339	23	23	20	32	1.98
531154--531344	89	2.1	90	96	0	348	23	23	20	32	1.98
531319--531364	20	2.3	20	100	0	92	19	28	21	30	1.98
531275--531409	65	2.1	65	94	1	236	21	24	21	32	1.98
531339--531469	45	2.9	45	96	0	244	21	22	21	34	1.97
531359--531434	25	3.2	25	64	17	72	23	23	18	34	1.96
531230--531454	110	2.1	109	97	0	423	22	24	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531599--531659	3	19.7	3	83	6	68	37	3	0	59	1.14
532651--532675	13	1.9	13	100	0	50	32	4	8	56	1.47
533127--533189	2	31.5	2	96	0	117	49	0	0	50	1.00
538280--538391	59	1.9	59	98	0	215	31	15	13	40	1.85
542997--543037	21	2.0	21	95	0	73	26	34	7	31	1.84
544340--544390	22	2.3	22	93	0	93	11	33	21	33	1.90
547622--547661	21	1.9	21	94	0	71	25	35	10	30	1.88
547945--548051	37	2.9	37	82	9	114	50	6	1	41	1.39
568853--568895	20	2.2	20	82	0	50	62	0	27	9	1.25
573041--573088	23	2.1	23	81	14	55	18	2	0	79	0.84
573099--573273	87	2.0	86	96	1	323	37	21	8	32	1.84
575901--575961	13	4.7	13	97	0	113	29	21	16	32	1.95
575901--575968	26	2.6	26	92	0	118	27	22	16	33	1.95
575944--576069	57	2.2	57	84	2	164	34	23	15	26	1.95
579016--579046	2	15.5	2	100	0	62	51	0	0	48	1.00
580319--580455	44	3.1	45	87	8	210	51	9	24	14	1.72
580863--580909	19	2.5	19	77	19	53	53	2	6	38	1.39
585390--585452	18	3.5	18	88	0	90	20	20	31	26	1.98
586518--586560	22	2.0	22	95	0	77	39	27	2	30	1.69
594501--594557	26	2.3	25	84	6	80	29	22	10	36	1.88
595125--595156	15	2.1	15	100	0	64	28	34	6	31	1.82
596748--596810	32	2.0	32	100	0	126	39	19	12	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599495--599544	12	3.9	13	75	15	50	70	4	6	20	1.25
599497--599549	26	2.1	25	86	6	72	73	3	7	15	1.20
602027--602085	6	9.3	6	75	10	55	74	0	6	18	1.03
602040--602085	20	2.4	20	92	7	78	73	0	6	19	1.04
605241--605269	14	2.1	14	100	0	58	44	13	13	27	1.82
606545--606692	32	4.6	32	77	8	140	33	17	12	36	1.87
608289--608610	45	7.2	44	86	2	401	22	20	13	43	1.86
614291--614660	45	8.2	45	88	0	499	23	21	12	42	1.86
615084--615228	41	3.2	41	66	25	103	24	20	13	41	1.88
620860--621124	82	3.2	81	81	6	320	34	15	13	36	1.87
622507--622536	11	2.8	11	95	5	53	36	10	0	53	1.35
628405--628442	18	2.1	18	90	0	58	57	13	26	2	1.49
634096--634188	45	2.1	45	95	0	168	23	23	20	32	1.98
640894--641012	9	13.8	9	73	19	69	78	0	15	6	0.95
640899--641012	17	6.7	17	69	22	53	78	0	14	7	0.94
640899--641017	18	7.0	17	71	17	88	78	0	14	6	0.93
640892--641015	41	3.1	42	75	21	126	78	0	15	6	0.95
640912--641015	35	2.9	34	81	13	129	78	0	15	5	0.92
640892--641017	7	17.1	7	73	17	64	78	0	15	6	0.94
640892--641038	23	6.7	22	71	18	67	76	0	17	6	0.97
641006--641046	21	1.9	21	90	5	64	68	0	24	7	1.15
640990--641046	21	2.8	20	79	10	62	71	0	21	7	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642344--642452	37	3.0	37	97	1	202	39	18	20	22	1.92
642467--643102	55	11.6	55	80	5	579	28	15	25	31	1.95
642475--643102	165	3.8	163	80	7	671	28	14	25	31	1.95
643558--643596	20	2.0	20	90	10	62	53	15	28	2	1.55
648133--648170	20	1.9	20	84	10	51	47	10	2	39	1.52
649945--649982	14	2.9	13	81	11	51	57	0	0	42	0.98
651256--651296	3	14.3	3	85	10	59	26	0	0	73	0.84
651318--651395	3	26.0	3	89	0	120	61	0	0	38	0.96
651647--651741	36	2.6	36	91	0	145	20	21	9	49	1.76
651789--652266	113	4.2	113	98	0	922	28	19	16	34	1.94
651789--652266	225	2.1	226	98	0	922	28	19	16	34	1.94
653015--653411	83	4.6	85	88	6	542	38	21	13	27	1.90
654569--654621	7	7.9	7	89	6	67	0	11	0	88	0.51
654577--654623	1	47.0	1	82	0	58	0	8	0	91	0.42
654559--654623	15	3.8	17	88	12	98	0	12	0	87	0.54
654560--654626	17	4.1	16	88	9	100	0	13	0	86	0.57
654559--654626	9	7.9	9	82	11	81	0	13	0	86	0.56
667284--667316	17	2.0	16	94	5	57	21	0	0	78	0.75
667325--667421	12	9.2	11	81	15	75	59	0	0	40	0.97
667337--667423	3	29.0	3	92	0	147	63	0	0	36	0.95
668888--668934	20	2.3	20	96	0	85	21	21	19	38	1.94
669105--669189	24	3.6	24	68	19	70	62	5	0	31	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671573--671656	22	3.7	22	70	20	66	59	4	0	35	1.19
673517--673902	183	2.1	184	91	3	620	43	3	8	45	1.51
675329--675356	2	14.0	2	100	0	56	50	0	0	50	1.00
675869--675945	28	2.8	28	93	0	127	40	29	16	12	1.86
678619--678682	24	2.7	24	85	0	83	53	17	12	17	1.73
679368--680543	594	2.0	594	99	0	2325	27	18	14	39	1.90
690417--690457	19	2.2	19	95	0	73	29	26	12	31	1.92
690703--690754	6	9.4	5	87	8	50	69	7	1	21	1.24
691512--691569	29	2.0	29	83	10	73	56	17	3	22	1.55
691499--691539	18	2.3	18	95	4	75	63	14	4	17	1.47
694182--694261	33	2.5	33	83	6	101	23	28	12	35	1.91
695844--695901	23	2.6	23	86	2	82	41	17	1	39	1.59
695881--695956	25	3.0	24	74	14	73	39	13	1	46	1.51
696296--696443	30	4.9	30	80	3	154	35	22	22	19	1.96
696296--696452	60	2.6	60	81	6	192	35	21	22	20	1.96
697721--697788	3	23.7	3	77	8	70	27	0	2	69	1.03
697720--697790	34	2.1	35	86	2	99	26	0	2	70	1.01
697721--697788	17	3.9	17	82	1	82	27	0	2	69	1.03
725719--725809	46	2.0	46	91	2	148	27	27	19	25	1.99
728619--728661	20	2.3	18	81	14	52	13	6	11	67	1.41
729112--729160	24	2.0	24	84	7	64	12	44	14	28	1.81
740262--740296	18	2.0	18	88	5	54	48	5	0	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
743714--743743	15	2.0	15	100	0	60	26	26	6	40	1.81
747798--747846	23	2.1	24	84	3	64	24	20	32	22	1.98
753979--754026	24	2.0	24	83	0	60	39	6	2	52	1.39
756153--756195	20	2.2	20	95	0	77	34	23	0	41	1.55
757294--757323	16	1.9	15	93	6	51	40	13	0	46	1.43
766623--766738	46	2.5	45	78	13	121	35	20	12	31	1.91
766536--766790	134	1.9	133	85	4	352	34	16	15	33	1.91
767717--767784	17	4.2	17	81	14	81	19	44	23	13	1.85
767739--767774	13	2.8	13	95	4	65	16	47	25	11	1.79
767785--767866	29	2.8	29	94	0	146	23	9	23	43	1.83

Tables:   1   2   3   4