genome.fa.s7937.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007937.1 Hibiscus syriacus cultivar Beakdansim tig00110347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  820613

Tables:   1   2   3   4   

This is table  4  of  4  ( 421 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
767814--767889	29	2.6	29	83	6	82	28	9	23	38	1.86
770995--771162	91	1.8	91	100	0	336	25	16	23	35	1.95
774999--775080	17	5.3	17	81	14	81	19	43	21	14	1.87
775022--775070	13	3.8	13	91	2	82	18	46	22	12	1.82
775088--775169	29	2.8	29	94	0	146	23	9	23	43	1.83
775117--775192	29	2.6	29	83	6	82	28	9	23	38	1.86
782261--782328	17	4.2	17	81	14	81	19	44	23	13	1.85
782283--782318	13	2.8	13	95	4	65	16	47	25	11	1.79
782335--782417	29	2.9	29	92	0	139	24	8	22	44	1.80
784595--784620	12	2.2	12	100	0	52	38	7	15	38	1.76
794211--794287	34	2.3	34	88	6	120	31	9	28	31	1.88
796787--796825	9	4.2	9	81	18	53	10	0	5	84	0.76
796784--796823	19	2.1	19	90	9	64	10	0	7	82	0.84
796875--797241	11	35.1	10	65	23	54	18	7	2	71	1.19
796899--796933	3	12.0	3	93	6	63	31	0	0	68	0.90
796945--797239	9	30.7	9	64	17	53	15	8	2	73	1.16
796968--797003	8	4.4	8	86	6	54	13	2	0	83	0.76
796956--797024	23	2.9	23	75	12	68	13	7	1	78	1.02
796965--797000	17	2.1	17	94	0	63	13	5	0	80	0.88
796943--797008	31	2.2	29	86	10	89	15	6	0	78	0.93
796956--797239	28	9.7	28	67	23	94	15	8	2	73	1.16
797115--797239	33	3.6	34	68	19	73	13	9	1	75	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800506--800537	14	2.3	14	94	0	55	50	0	3	46	1.17
800506--800594	14	5.6	14	68	27	54	43	1	7	47	1.39
800705--800758	20	2.6	20	75	16	56	42	0	0	57	0.98
800734--800814	32	2.7	30	85	11	96	43	0	3	53	1.18
800715--800823	28	3.7	28	77	12	85	46	0	2	50	1.15
800853--800896	22	2.0	23	90	4	72	43	0	2	54	1.12
800854--800918	23	3.0	23	82	6	64	46	0	3	50	1.17
801023--801120	51	1.9	50	83	8	126	50	1	2	46	1.19
806608--806646	16	2.4	16	95	0	69	20	25	15	38	1.92
806657--806718	16	3.9	16	77	12	56	27	20	9	41	1.84
806846--806872	13	2.1	13	100	0	54	55	0	0	44	0.99
806846--806888	13	3.1	14	86	6	52	55	0	2	41	1.12
806928--806981	23	2.3	24	93	3	92	42	1	9	46	1.46
807225--807266	11	3.7	11	84	6	57	47	4	7	40	1.52
807806--807881	13	5.9	14	69	18	67	26	7	17	48	1.74
807808--807885	25	3.1	25	92	0	120	25	8	16	48	1.75
808535--808588	24	2.2	24	78	15	58	51	1	0	46	1.11
808561--808703	44	3.1	44	71	15	119	50	2	4	43	1.33
808560--808634	19	3.5	20	78	20	73	50	1	1	46	1.18
808598--808635	13	2.6	16	84	16	55	50	2	0	47	1.15
808536--808652	44	2.8	41	75	18	109	49	1	2	46	1.25
808646--808709	31	2.1	30	82	5	76	50	4	4	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
808667--808840	64	2.7	64	74	11	165	48	4	5	41	1.45
808850--808961	21	5.5	21	76	12	110	45	6	7	41	1.57
808825--808992	61	2.8	62	87	7	245	45	7	6	41	1.57
808992--809129	57	2.4	55	82	9	161	42	7	7	42	1.61
809004--809096	20	4.7	20	68	24	63	45	5	5	44	1.49
809417--809454	7	5.4	7	87	0	58	15	0	42	42	1.47
809418--809463	21	2.2	21	92	0	74	21	0	36	41	1.54
809546--809689	2	75.5	2	69	14	81	46	4	1	47	1.32
809637--809717	14	5.8	14	69	13	51	46	3	1	48	1.27
809699--809741	23	1.9	22	85	4	59	41	6	2	48	1.43
809617--809741	57	2.2	57	94	2	216	46	5	1	46	1.36
809625--809741	56	2.1	56	95	3	182	46	4	1	47	1.32
809723--809801	13	5.8	13	69	11	52	40	7	7	44	1.61
812232--812288	22	2.6	22	100	0	114	45	0	5	49	1.24
813454--813499	18	2.4	18	85	7	56	32	30	13	23	1.93
816360--816393	17	1.9	17	88	5	50	23	2	0	73	0.97
819354--819443	44	2.0	45	85	12	123	37	17	13	31	1.89

Tables:   1   2   3   4

The End!