genome.fa.s7964.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007964.1 Hibiscus syriacus cultivar Beakdansim tig00110393_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1737572

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 720 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300373--300457	7	12.3	7	94	2	154	0	28	0	71	0.86
301362--301503	43	3.3	43	82	4	178	29	15	23	31	1.95
301377--301545	85	2.0	85	80	6	191	29	15	22	32	1.95
301380--301671	42	6.9	43	79	4	209	25	17	21	35	1.95
302086--302153	21	3.2	21	87	0	91	2	32	20	44	1.67
302155--302206	21	2.5	22	71	6	54	7	36	13	42	1.73
313202--313245	11	4.0	11	93	0	79	15	0	27	56	1.40
313201--313244	22	2.0	22	100	0	88	13	0	27	59	1.35
317771--317944	41	4.3	40	79	7	172	30	17	16	35	1.92
317771--317962	82	2.3	81	82	5	226	32	16	16	34	1.91
317890--318080	42	4.6	41	70	15	135	26	17	19	36	1.94
320157--320198	22	1.9	22	85	9	59	69	4	2	23	1.20
320846--320925	24	3.3	24	96	0	142	13	30	31	25	1.94
332902--333139	114	2.1	116	96	3	446	59	3	4	32	1.33
341336--341361	2	13.0	2	100	0	52	50	0	0	50	1.00
344275--344338	31	2.1	31	91	5	103	42	3	0	54	1.16
344277--344330	25	2.1	26	86	3	74	42	3	0	53	1.18
344265--344328	5	12.4	5	74	23	53	40	3	0	56	1.15
357310--357466	21	7.8	20	72	7	84	38	24	17	19	1.92
357433--357625	20	9.6	20	83	4	228	35	25	20	18	1.95
358127--358213	19	4.7	20	73	21	80	44	18	26	10	1.81
358127--358179	21	2.6	21	87	3	72	45	16	28	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358164--358220	14	3.7	14	75	20	60	43	22	24	8	1.81
358156--358236	33	2.5	33	95	0	144	46	22	22	8	1.78
358232--358329	19	5.7	19	70	22	90	10	23	22	43	1.83
358254--358343	14	5.7	14	72	23	72	8	24	23	43	1.82
358237--358351	33	3.5	33	97	0	221	9	23	20	46	1.80
360050--360533	93	5.2	93	100	0	968	21	12	19	46	1.83
360542--360640	19	5.4	19	78	12	109	9	17	28	45	1.78
360525--360603	33	2.4	33	91	2	124	7	18	26	46	1.76
362647--362671	12	2.1	12	100	0	50	0	28	0	72	0.86
362846--362892	24	2.0	24	87	8	69	38	21	14	25	1.92
363604--363809	20	10.3	20	86	4	247	21	18	24	34	1.96
363796--363839	20	2.2	20	84	8	54	11	20	27	40	1.86
369462--369486	12	2.1	12	100	0	50	32	8	16	44	1.76
370707--370744	20	1.9	20	88	0	58	26	26	5	42	1.76
374916--374977	22	2.8	22	76	9	63	54	1	3	40	1.26
374960--375016	16	3.4	16	79	9	60	43	0	3	52	1.18
375251--375289	19	2.0	20	90	5	62	56	2	0	41	1.13
378601--378790	85	2.3	83	83	6	224	32	2	12	53	1.52
378709--378766	24	2.4	25	82	2	73	27	0	12	60	1.32
380223--380265	14	3.2	13	78	12	50	67	0	0	32	0.91
390579--391137	134	4.1	137	80	10	490	33	11	19	35	1.88
392995--393030	2	18.5	2	94	5	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394567--394621	23	2.3	26	78	15	64	7	16	0	76	1.00
395391--395452	25	2.5	25	97	0	115	20	16	25	37	1.93
397132--397173	14	3.0	14	96	0	75	9	14	19	57	1.64
398330--398391	17	3.4	17	69	16	52	25	29	25	19	1.99
398330--398420	38	2.4	38	90	0	146	24	28	24	23	1.99
398904--398961	20	3.0	20	82	12	77	20	34	29	15	1.94
399160--399199	20	1.9	21	85	10	55	37	35	10	17	1.83
399414--399483	34	2.1	32	89	5	104	31	15	31	21	1.95
400453--400499	3	16.0	3	88	4	69	68	2	29	0	1.02
402177--402610	216	2.0	215	94	4	766	37	12	8	41	1.75
402640--402681	21	2.0	21	95	0	75	21	38	28	11	1.89
402666--402749	33	2.5	34	86	3	134	21	32	25	21	1.98
402692--402747	15	3.5	15	71	21	51	21	33	23	21	1.97
402931--402970	20	1.9	21	85	10	55	37	35	10	17	1.83
407930--407993	24	2.7	23	75	13	76	9	10	20	59	1.58
417526--417577	22	2.4	22	100	0	104	15	15	5	63	1.48
435280--435328	25	2.0	25	88	8	73	34	4	4	57	1.37
435705--435766	23	2.7	23	100	0	124	22	22	33	20	1.97
442148--442208	28	2.2	28	96	0	113	22	6	22	47	1.74
445950--446024	9	8.8	9	77	11	86	41	0	0	58	0.98
445959--446024	25	2.6	25	95	0	114	42	0	0	57	0.98
445945--446028	16	5.5	16	75	24	92	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446786--446811	12	2.2	12	100	0	52	61	15	15	7	1.55
449347--449509	55	3.0	55	94	0	272	30	13	20	35	1.91
464308--464367	22	2.7	23	84	5	70	23	31	21	23	1.98
464313--464375	22	2.9	22	81	6	58	22	30	25	22	1.99
468432--468966	83	6.4	83	82	4	519	34	17	17	30	1.94
468432--468863	165	2.6	164	82	4	485	35	18	16	29	1.93
469713--469767	26	2.1	27	86	3	76	54	20	3	21	1.59
471909--471953	2	23.5	2	86	8	67	48	2	0	48	1.13
474061--474120	27	2.2	28	87	3	86	40	6	3	50	1.45
483999--484073	29	2.6	29	81	10	75	70	5	16	8	1.29
500045--500097	25	2.1	25	85	0	70	39	1	1	56	1.21
502737--502773	18	2.1	18	89	0	56	43	8	21	27	1.80
508853--508899	19	2.5	19	96	0	85	38	6	36	19	1.77
511416--511456	20	2.0	21	85	4	57	48	4	7	39	1.52
536587--536848	130	2.0	130	93	1	445	50	13	3	32	1.57
539661--539745	29	2.8	31	75	12	86	40	16	3	40	1.66
541688--541748	32	1.9	32	83	6	79	44	4	3	47	1.41
542117--542147	2	15.5	2	100	0	62	48	0	0	51	1.00
543626--543654	2	14.5	2	100	0	58	51	0	0	48	1.00
543851--543931	24	3.4	24	82	3	83	45	18	13	22	1.84
543868--543982	24	4.8	24	86	6	153	40	19	16	23	1.90
543868--543999	48	2.8	48	80	6	151	43	18	15	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544958--545007	26	1.9	26	87	0	73	24	18	22	36	1.95
546430--546469	7	5.4	7	82	11	53	25	25	35	15	1.94
546431--546469	15	2.6	15	95	0	69	25	23	35	15	1.94
546472--546508	13	2.8	13	91	0	65	13	21	48	16	1.80
546459--546494	18	2.0	18	100	0	72	11	22	50	16	1.77
546431--546472	8	5.5	8	86	8	61	23	23	35	16	1.95
546444--546513	31	2.2	32	89	5	106	15	21	45	17	1.85
548689--548769	24	3.4	24	82	3	83	45	18	13	22	1.84
548706--548820	24	4.8	24	86	6	153	40	19	16	23	1.90
548706--548837	48	2.8	48	80	6	151	43	18	15	22	1.88
549794--549843	26	1.9	26	87	0	73	24	18	22	36	1.95
551261--551300	7	5.4	7	82	11	53	25	25	35	15	1.94
551262--551303	8	5.5	8	86	8	61	23	23	35	16	1.95
551262--551300	15	2.6	15	95	0	69	25	23	35	15	1.94
551303--551351	13	3.8	13	100	0	98	18	16	48	16	1.81
551290--551325	18	2.0	18	94	0	63	13	19	50	16	1.79
552947--552992	20	2.3	20	100	0	92	30	6	23	39	1.80
553132--553210	20	4.0	20	74	8	63	31	13	16	37	1.88
553458--553524	28	2.4	28	89	0	107	19	20	22	37	1.95
554276--554322	17	2.8	17	75	12	51	38	4	2	55	1.31
554417--554478	23	2.9	22	83	7	74	58	1	3	37	1.24
555523--555563	21	2.0	21	90	0	64	41	19	0	39	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557077--557188	36	3.1	36	62	21	90	33	25	22	17	1.96
557047--557189	71	2.0	71	100	0	286	34	25	20	18	1.96
569371--569497	63	2.0	63	100	0	254	25	12	26	35	1.92
569567--569613	19	2.7	18	84	12	62	31	2	2	63	1.18
575521--575661	68	2.0	70	86	4	196	31	21	19	27	1.98
576320--576350	12	2.6	12	94	0	53	6	16	41	35	1.74
586739--586791	21	2.5	21	81	0	61	18	26	20	33	1.96
586781--586853	20	3.7	20	92	0	128	36	21	20	20	1.95
587440--587488	20	2.5	20	86	0	71	34	24	20	20	1.96
587501--587587	20	4.4	20	83	1	86	14	16	22	45	1.84

Tables:   1   2   3   4   5   6