genome.fa.s7970.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007970.1 Hibiscus syriacus cultivar Beakdansim tig00110407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  487657

Tables:   1   2   3   

This is table  1  of  3  ( 288 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5026--5063	2	19.0	2	100	0	76	50	0	0	50	1.00
17834--17891	20	2.6	22	89	10	84	31	20	22	25	1.98
18667--18714	18	2.7	18	93	0	87	14	20	35	29	1.93
21920--21977	20	2.7	20	84	10	71	31	18	22	27	1.97
22734--22787	18	3.0	18	94	0	99	16	20	33	29	1.95
29586--29625	20	2.0	20	85	5	53	57	5	2	35	1.34
33457--33541	31	2.8	31	76	15	86	62	21	8	8	1.49
40990--41029	14	2.9	14	96	0	71	7	35	35	22	1.82
45066--45137	30	2.4	30	93	2	119	34	20	0	44	1.52
52909--53024	60	1.9	60	82	3	144	33	13	16	36	1.88
53515--53810	160	1.8	160	87	0	439	27	20	6	46	1.74
58544--58597	15	3.2	17	77	17	51	40	1	1	55	1.21
64747--64839	46	2.0	47	93	2	161	32	12	20	34	1.91
65687--65799	60	1.9	60	83	3	147	38	10	9	40	1.73
65986--66382	207	1.9	207	97	0	749	39	11	10	38	1.76
66839--66894	24	2.3	24	93	0	94	48	28	21	1	1.60
66839--66905	24	2.7	24	88	4	80	46	28	22	2	1.66
71330--71679	180	1.9	182	95	1	632	27	21	21	30	1.98
72831--72948	36	3.4	34	73	9	112	27	17	14	40	1.88
72840--72996	70	2.1	76	85	9	211	26	18	15	39	1.90
73004--73298	103	2.9	104	90	3	465	30	18	12	37	1.88
73196--73271	36	2.1	36	87	0	107	23	19	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73231--73453	86	2.6	88	91	2	353	32	20	10	36	1.87
79659--79721	21	2.9	21	85	4	81	20	36	25	17	1.94
79703--79742	21	1.9	21	89	0	62	25	40	25	10	1.86
81974--82008	18	1.9	18	100	0	70	34	0	40	25	1.56
83282--83490	106	2.0	104	89	2	321	33	24	19	22	1.97
83937--85993	4	528.0	4	92	6	3516	49	24	0	24	1.53
86179--86243	34	1.9	34	83	0	85	52	7	16	23	1.70
88960--89002	22	2.0	22	95	0	77	69	2	6	20	1.23
89338--89911	42	13.7	42	83	3	593	29	21	18	30	1.97
92438--92491	22	2.5	22	96	0	99	48	7	18	25	1.74
94980--95019	21	1.9	21	94	0	71	47	12	40	0	1.41
94978--95023	10	4.6	10	77	17	51	47	13	39	0	1.42
95452--95542	44	2.1	44	87	4	130	27	23	17	31	1.97
95924--95972	18	3.0	16	80	13	55	18	14	0	67	1.23
96000--96043	17	2.5	18	81	3	54	9	15	0	75	1.05
96126--96160	15	2.2	16	90	5	54	34	0	0	65	0.93
96635--96669	18	1.9	18	88	0	52	22	5	8	62	1.45
101264--102568	84	15.7	83	80	4	1242	30	24	20	24	1.99
101264--102544	249	5.1	245	83	4	1485	30	24	20	24	1.99
103207--103377	37	4.4	39	75	7	100	40	3	11	45	1.57
103183--103376	77	2.5	75	80	6	196	40	3	11	44	1.59
103311--103449	27	4.5	27	73	23	98	43	4	4	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103374--103421	11	4.3	11	75	15	53	43	6	0	50	1.27
103384--103428	23	2.1	22	88	12	67	46	4	0	48	1.22
103407--103533	40	3.3	38	86	11	170	44	3	4	47	1.42
103536--103633	41	2.5	39	81	8	108	42	4	7	45	1.50
109092--109512	208	2.0	209	99	0	826	26	19	18	36	1.94
112896--112940	16	2.8	16	93	0	81	55	22	13	8	1.65
113848--113909	24	2.6	24	87	5	81	54	17	12	14	1.70
114317--114359	22	2.0	21	86	4	59	30	4	6	58	1.45
114268--114478	105	2.0	105	99	0	413	36	3	6	54	1.44
114422--114464	22	2.0	21	86	4	59	30	4	6	58	1.45
115098--115217	35	3.3	36	89	5	181	43	20	5	31	1.73
115149--115209	21	3.2	21	65	29	64	42	21	4	31	1.74
115100--115244	35	4.1	36	83	11	142	41	19	6	33	1.76
118535--118566	16	2.0	16	93	0	55	34	25	6	34	1.81
118975--119094	35	3.3	36	89	5	181	43	20	5	31	1.73
119026--119086	21	3.2	21	65	29	64	42	21	4	31	1.74
118977--119121	35	4.1	36	83	11	142	41	19	6	33	1.76
123262--123316	27	2.0	27	92	0	92	36	25	14	23	1.93
138606--138637	16	2.0	16	93	0	55	34	25	6	34	1.81
140100--140216	58	2.0	58	100	0	234	17	30	18	33	1.94
141754--141816	24	2.8	23	75	17	62	31	4	3	60	1.33
146084--146110	13	2.1	13	100	0	54	14	7	22	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146846--146870	6	4.2	6	100	0	50	20	32	16	32	1.94
149195--149252	29	2.0	29	86	0	80	13	36	25	24	1.92
149297--149361	14	4.2	14	77	21	67	24	35	30	9	1.87
149291--149356	34	1.9	34	100	0	132	22	36	28	12	1.90
149360--149424	33	2.0	33	90	6	105	27	24	38	9	1.86
149516--149630	29	4.0	29	91	2	187	19	28	34	17	1.94
151401--151490	45	2.0	45	82	8	112	24	11	25	38	1.88
151660--151749	38	2.4	38	88	1	128	22	11	27	38	1.88
154701--154844	36	4.0	36	82	7	159	45	4	6	44	1.48
154830--154981	11	13.7	11	70	21	97	46	2	6	44	1.43
154830--154981	24	7.4	21	67	28	78	46	2	6	44	1.43
154805--154904	50	2.0	51	92	2	166	43	4	7	46	1.49
154830--154895	18	3.9	17	71	16	66	43	1	7	46	1.41
154694--154819	14	8.8	14	68	17	80	46	3	5	44	1.42
154890--154979	24	3.8	24	74	12	89	51	3	5	40	1.42
154866--154981	35	3.2	35	80	8	126	47	2	6	43	1.44
155012--155049	15	2.6	15	91	4	60	28	2	0	68	1.03
155288--155474	14	13.3	14	69	15	102	44	3	6	45	1.45
155281--155486	38	5.8	37	72	19	127	45	2	6	45	1.45
155354--155484	21	5.9	21	68	20	79	45	3	6	45	1.43
155365--155478	18	6.8	17	66	18	69	43	3	6	46	1.45
155340--155481	50	2.8	50	85	3	194	44	3	6	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155457--155525	24	2.9	24	75	16	79	53	1	5	39	1.34
155457--155527	11	6.1	11	73	15	54	53	1	5	39	1.33
155566--155657	20	5.3	20	65	32	68	38	3	3	55	1.32
155547--155675	7	19.4	7	65	19	53	37	2	2	58	1.24
155552--155677	33	3.8	33	90	6	202	36	2	2	58	1.24
156889--156917	14	2.0	15	93	6	51	62	0	3	34	1.12
158341--158417	35	2.2	35	90	2	120	24	24	22	28	1.99
159048--159124	35	2.2	35	93	2	129	31	22	23	23	1.99
161889--161962	33	2.2	34	92	4	123	56	2	2	37	1.28
161960--162016	13	4.7	13	75	12	59	40	7	3	49	1.47
161961--162152	24	7.8	24	70	22	96	44	6	3	46	1.44
161992--162122	21	6.0	21	69	23	67	44	6	3	45	1.46
161992--162090	50	2.0	50	93	0	171	45	6	3	45	1.43
162033--162080	14	3.1	14	82	14	51	43	4	2	50	1.33
161997--162090	18	5.6	17	69	20	65	45	6	2	45	1.40
162077--162152	14	5.8	14	71	13	72	46	5	2	46	1.39
162340--162466	33	3.8	32	86	11	175	56	2	2	38	1.25
162354--162405	21	2.5	20	78	3	59	63	0	1	34	1.06
162400--162458	20	3.3	19	69	30	58	52	5	3	38	1.40
162346--162472	66	1.9	66	88	7	195	58	2	2	37	1.24
162509--162594	23	3.7	22	83	16	111	40	5	4	48	1.48
162509--162692	24	7.7	23	74	15	119	41	5	3	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162523--162812	98	2.9	100	85	7	356	43	6	3	46	1.46
162503--162656	21	7.6	20	68	26	69	42	6	3	46	1.48
162531--162826	14	22.1	14	68	19	115	43	6	3	46	1.44
162714--162766	21	2.5	21	87	6	72	49	3	1	45	1.31
162675--162812	35	3.9	35	87	4	181	46	6	2	44	1.44
162663--162833	38	4.8	38	79	12	200	45	7	2	45	1.45
175215--175247	16	2.0	17	88	5	50	39	0	6	54	1.25
175320--175414	45	2.1	45	84	3	120	38	28	10	22	1.87
175365--175439	38	2.0	38	84	5	98	41	21	9	28	1.84
175503--175574	29	2.4	29	86	2	108	25	15	5	54	1.62

Tables:   1   2   3