genome.fa.s7970.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007970.1 Hibiscus syriacus cultivar Beakdansim tig00110407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  487657

Tables:   1   2   3   

This is table  3  of  3  ( 288 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366356--366393	17	2.2	17	90	0	58	15	0	0	84	0.63
367939--367991	17	3.1	17	86	0	70	41	5	13	39	1.68
379737--379787	16	2.9	19	77	19	65	41	3	25	29	1.73
382734--382784	21	2.5	22	84	9	63	39	1	0	58	1.09
383546--383604	2	29.5	2	100	0	118	50	0	0	49	1.00
391566--391636	2	35.5	2	100	0	142	50	0	0	49	1.00
391624--391819	107	1.8	107	83	0	257	38	14	11	35	1.82
392324--392427	24	4.5	24	80	13	103	36	20	0	42	1.59
392324--392406	23	3.6	23	84	7	98	39	19	1	39	1.59
392328--392427	47	2.2	46	82	12	125	35	20	1	44	1.58
394036--394114	6	13.0	6	93	2	131	35	0	0	64	0.94
394045--394114	3	23.3	3	97	0	131	34	0	0	65	0.93
395148--395174	13	2.1	13	100	0	54	22	14	14	48	1.81
399414--399451	15	2.3	18	86	13	55	36	0	0	63	0.95
399935--399969	16	2.2	16	90	5	54	2	48	11	37	1.54
400353--400408	7	8.0	7	73	15	53	64	1	33	0	1.04
400365--400406	10	4.1	10	79	14	50	66	2	30	0	1.04
401074--401119	20	2.3	20	92	0	74	45	0	0	54	0.99
402068--402349	5	57.8	5	87	11	426	59	0	0	40	1.00
402363--402408	14	3.4	14	93	3	76	30	0	0	69	0.89
402364--402408	9	4.9	9	84	13	56	31	0	0	68	0.89
402364--402405	5	9.0	5	87	10	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408796--409033	120	1.9	121	87	7	347	47	3	11	36	1.57
409031--409098	27	2.4	28	80	11	77	52	1	2	42	1.25
409197--409261	33	1.9	34	96	3	123	53	3	3	40	1.32
409266--409342	27	3.0	27	73	21	83	55	7	0	36	1.29
409230--409342	50	2.1	54	84	10	146	53	6	1	38	1.36
413977--414019	22	1.9	23	85	4	61	39	4	48	6	1.51
417128--417163	2	18.5	2	88	5	56	50	0	47	2	1.15
424310--424344	17	2.1	17	100	0	70	54	0	11	34	1.37
426778--426846	18	3.8	18	84	0	84	31	30	17	20	1.95
435731--435772	21	2.0	21	90	0	66	33	33	11	21	1.90
435824--435868	15	3.0	15	90	0	72	26	31	11	31	1.91
448648--448673	2	13.0	2	100	0	52	50	0	0	50	1.00
449745--449793	17	2.8	18	78	9	57	55	2	12	30	1.48
456544--456572	2	14.5	2	100	0	58	48	0	0	51	1.00
458850--459365	162	3.1	161	86	6	638	40	14	16	28	1.87
459012--459550	182	3.0	181	90	2	821	41	13	17	27	1.87
463827--463869	17	2.4	17	88	7	59	32	2	9	55	1.44
464226--465379	200	5.8	200	85	3	1445	37	13	15	33	1.86
466853--466898	6	7.7	6	92	0	65	43	4	32	19	1.71
468221--468267	24	2.0	24	82	0	58	34	4	12	48	1.61
469604--470969	400	3.4	397	85	4	1687	38	13	15	32	1.86
469604--470969	199	6.8	198	85	3	1618	38	13	15	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474032--474728	200	3.5	199	81	6	759	37	14	15	31	1.88
474836--474880	23	2.0	23	90	0	72	37	17	8	35	1.81
483008--483047	19	2.0	19	85	9	53	22	17	22	37	1.94
483585--483647	33	1.9	33	93	0	108	38	22	14	25	1.92

Tables:   1   2   3

The End!