genome.fa.s8014.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008014.1 Hibiscus syriacus cultivar Beakdansim tig00110480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  624021

Tables:   1   2   3   4   

This is table  1  of  4  ( 375 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12314--12378	32	2.0	32	88	5	96	26	9	13	50	1.71
13796--13865	27	2.5	29	77	13	83	42	0	20	37	1.52
17992--18034	15	2.8	15	85	3	59	55	0	2	41	1.12
18517--18557	16	2.5	17	84	7	50	43	2	0	53	1.13
18997--19045	21	2.5	19	78	18	55	38	6	0	55	1.25
20019--20076	22	2.7	22	92	5	93	18	41	13	25	1.88
20467--20498	14	2.3	14	94	0	55	6	21	21	50	1.71
20487--20556	20	3.5	20	86	1	97	12	14	22	50	1.77
20520--20563	20	2.2	20	87	0	61	13	11	20	54	1.69
27615--27693	20	3.8	21	80	9	81	25	32	25	16	1.96
31724--31757	14	2.4	14	100	0	68	32	0	20	47	1.51
31891--31954	20	3.2	20	88	0	101	46	23	17	12	1.81
31995--32103	20	5.8	20	78	14	115	26	19	20	33	1.96
31961--32095	54	2.5	54	86	2	191	22	20	20	36	1.95
32274--32308	18	1.9	18	94	0	61	17	2	25	54	1.57
34570--34623	24	2.2	24	93	0	90	40	16	18	24	1.90
35449--35512	20	3.2	20	88	0	101	26	17	28	28	1.97
37046--37071	2	13.0	2	100	0	52	50	0	0	50	1.00
37937--37970	15	2.3	15	100	0	68	35	20	29	14	1.93
44229--44269	20	2.0	20	100	0	82	29	19	14	36	1.92
44741--44851	57	1.9	57	100	0	222	42	13	18	26	1.87
55431--55460	15	1.9	16	93	6	53	36	3	0	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55662--55729	2	37.0	2	72	16	58	48	0	0	51	1.00
55888--55941	19	2.8	20	83	8	69	44	0	1	53	1.11
55894--55948	19	3.0	18	77	15	51	43	0	1	54	1.10
59365--59412	24	2.0	24	87	0	69	29	8	8	54	1.60
60100--60177	41	1.9	41	97	0	147	16	10	6	66	1.41
70926--71097	29	5.9	29	97	0	326	44	21	6	27	1.77
76739--76806	35	1.9	35	96	0	127	42	5	22	29	1.77
78667--78887	64	3.5	64	80	2	212	33	19	19	27	1.96
79544--79668	31	4.0	31	92	4	200	18	18	24	39	1.92
81024--81088	31	2.1	31	82	0	76	41	10	10	36	1.75
85369--85526	21	7.8	20	72	7	86	38	25	17	18	1.92
85493--85802	20	15.5	20	87	1	352	37	24	17	20	1.94
86483--86529	24	2.0	24	87	8	69	25	14	21	38	1.92
88941--89110	19	9.7	19	76	19	181	45	18	21	15	1.85
88941--89110	52	3.2	52	94	2	279	45	18	21	15	1.85
88927--89104	33	5.2	33	80	15	161	46	18	21	14	1.84
89119--89216	19	5.4	19	84	13	143	14	22	17	45	1.84
89100--89216	53	2.2	53	96	1	218	13	24	17	43	1.86
89323--89359	14	2.6	14	91	0	65	45	21	0	32	1.52
91270--91319	19	2.6	19	87	0	64	50	24	16	10	1.75
91324--91388	19	3.7	19	76	19	77	46	18	21	13	1.84
91291--91383	33	2.8	33	88	0	141	47	20	20	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91384--91511	19	7.3	19	74	19	116	8	17	28	46	1.77
91384--91474	32	2.8	34	91	5	143	7	18	27	46	1.76
91559--92027	93	5.1	93	99	0	913	45	19	12	22	1.83
93726--93815	14	5.7	14	68	23	54	45	21	23	10	1.81
93718--93832	33	3.5	33	96	0	212	47	19	22	10	1.79
93740--93837	19	5.7	19	67	22	81	45	20	22	11	1.82
93849--93905	14	3.7	14	75	20	60	8	24	22	43	1.81
93833--93913	33	2.5	33	95	0	144	8	22	22	46	1.78
93890--93965	21	3.7	21	80	3	100	11	23	17	47	1.80
94045--94115	33	2.2	33	92	0	115	47	18	22	11	1.80
94297--94351	22	2.5	22	81	0	74	20	16	40	23	1.91
94498--94651	20	7.7	20	81	7	168	18	18	26	37	1.93
94497--94651	40	3.8	40	82	4	186	18	18	26	37	1.93
94638--94720	21	4.0	21	73	6	78	25	16	24	33	1.96
94618--94716	42	2.4	43	77	11	100	21	18	23	37	1.94
95199--95247	6	8.5	6	97	2	84	30	53	16	0	1.43
95749--95780	6	5.7	6	96	3	50	0	18	53	28	1.45
108616--108792	36	5.1	35	77	8	173	29	21	2	46	1.64
115932--115964	17	1.9	17	93	0	57	63	0	0	36	0.95
119694--119719	13	2.0	13	100	0	52	46	15	7	30	1.74
132982--133064	29	2.9	29	83	0	103	19	39	27	13	1.89
134145--134183	20	2.0	20	89	0	60	15	12	12	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134732--134807	35	2.2	35	95	0	134	40	23	0	35	1.55
135204--135451	130	1.9	130	92	0	415	36	14	13	35	1.85
135218--135482	130	2.0	129	81	4	309	39	12	13	33	1.83
135779--135841	28	2.3	27	78	8	63	46	1	3	49	1.27
135921--135954	16	2.0	18	88	11	54	64	5	2	26	1.30
136593--136658	32	2.1	32	97	0	123	42	28	3	25	1.70
138582--138616	2	17.5	2	100	0	70	48	0	0	51	1.00
144548--144598	24	2.1	24	89	7	77	15	19	19	45	1.86
151033--151072	21	1.9	21	94	0	71	45	25	0	30	1.54
151195--151239	18	2.4	19	92	3	74	24	0	8	66	1.20
156272--156312	2	20.5	2	100	0	82	48	0	0	51	1.00
156860--156907	25	1.9	26	91	8	82	58	0	0	41	0.98
157371--157401	3	10.3	3	100	0	62	67	0	0	32	0.91
164070--164103	16	2.2	16	89	5	52	29	0	14	55	1.40
170884--170979	45	2.1	45	92	0	156	34	2	13	50	1.54
178318--178374	22	2.6	21	78	8	60	29	5	15	49	1.67
180459--180553	28	3.7	27	70	18	85	25	0	26	48	1.51
180457--180562	49	2.2	49	89	0	167	23	0	30	46	1.53
180549--180666	7	16.7	7	72	15	64	21	0	32	46	1.51
180531--180595	28	2.3	27	79	10	67	23	0	35	41	1.55
180585--180668	21	3.9	21	77	13	73	21	0	27	51	1.48
180502--180652	14	10.7	15	69	12	54	21	0	31	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180585--180668	43	2.0	43	83	9	109	21	0	27	51	1.48
180692--180742	14	3.8	13	73	17	50	21	0	29	49	1.50
183192--183295	17	6.1	17	94	0	163	21	21	30	26	1.98
183192--183330	51	2.7	51	84	3	163	22	20	29	28	1.98
183277--183360	11	7.4	11	76	7	69	28	21	22	27	1.99
183615--183654	7	5.9	7	83	16	57	27	2	0	70	1.01
183618--183661	20	2.2	20	100	0	88	22	4	0	72	1.02
183615--183654	13	2.9	14	79	20	57	27	2	0	70	1.01
189319--189361	22	2.0	22	95	0	77	53	11	0	34	1.37
189346--189402	18	3.4	18	67	18	59	57	10	0	31	1.32
189321--189369	22	2.2	22	85	3	62	57	12	0	30	1.36
189309--189721	54	7.5	54	75	17	332	53	12	0	34	1.41
189341--189426	32	2.7	32	98	0	163	54	11	0	33	1.37
189324--189537	112	1.9	112	96	1	394	54	12	0	33	1.38
189407--189481	22	3.2	23	71	17	73	54	16	0	29	1.42
189373--189671	80	3.7	80	88	7	465	52	13	0	33	1.43
189517--189559	22	2.0	22	100	0	86	51	13	0	34	1.42
189405--189796	134	2.9	134	89	5	492	52	13	0	33	1.43
189519--189567	22	2.2	22	88	3	71	55	14	0	30	1.40
189602--189647	22	2.0	22	87	4	65	54	15	0	30	1.41
189651--189693	22	2.0	22	100	0	86	51	13	0	34	1.42
189653--189701	22	2.2	22	88	3	71	55	14	0	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189309--189726	166	2.5	166	84	4	635	52	12	0	34	1.41
189736--189824	22	3.9	22	68	8	79	50	11	0	38	1.38
189309--189796	166	2.9	160	73	12	445	53	12	0	34	1.41
189776--189893	15	7.5	15	77	13	121	50	2	0	46	1.21
189736--189875	67	2.1	67	83	5	174	50	7	0	42	1.30
189696--189863	47	3.5	47	80	13	157	51	8	0	39	1.33
189775--189944	82	2.0	84	82	12	210	49	2	0	47	1.21
193092--193124	15	2.3	15	89	5	50	39	0	0	60	0.97
196305--196423	35	3.3	37	88	8	174	31	5	18	44	1.71
200932--201050	35	3.3	37	88	8	174	31	5	18	44	1.71

Tables:   1   2   3   4