Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008014.1 Hibiscus syriacus cultivar Beakdansim tig00110480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  624021

Tables:   1   2   3   4   

This is table  4  of  4  ( 375 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
616070--616105
14
2.6
14
90
0
54
30
0
22
47
1.52
616222--616289
19
3.8
19
85
14
101
47
17
22
13
1.82
616308--616345
20
1.9
20
94
0
67
15
21
23
39
1.92
617394--617447
24
2.2
24
90
0
81
24
16
20
38
1.92
619921--620043
33
3.7
33
83
4
176
44
19
21
14
1.86
619921--620050
66
2.0
66
93
0
224
43
19
20
16
1.87
620043--620084
20
2.2
20
83
8
52
16
19
23
40
1.91
620225--620261
14
2.6
14
91
0
65
45
21
0
32
1.52
621634--621713
42
1.9
42
84
0
106
22
17
38
21
1.93
623752--623788
14
2.6
14
95
0
65
40
24
24
10
1.87
623713--623818
47
2.1
50
84
8
137
39
24
23
12
1.89
623765--623876
39
3.2
33
78
10
100
43
25
20
10
1.84
623812--623900
19
4.7
19
90
4
126
47
21
19
12
1.82
623812--623900
38
2.3
39
92
3
146
47
21
19
12
1.82
623896--623943
20
2.5
20
79
3
62
10
16
25
47
1.78

Tables:   1   2   3   4

The End!