genome.fa.s8014.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008014.1 Hibiscus syriacus cultivar Beakdansim tig00110480_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  624021

Tables:   1   2   3   4   

This is table  2  of  4  ( 375 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206839--206908	34	2.1	34	100	0	140	15	37	15	31	1.89
211258--211681	212	2.0	213	88	0	625	37	20	13	27	1.91
238608--238636	10	2.9	10	100	0	58	20	17	10	51	1.74
240763--240834	36	2.0	36	88	0	108	30	16	27	25	1.97
241149--241223	38	2.0	38	84	5	100	49	1	0	49	1.09
249278--249314	19	1.9	19	100	0	74	59	8	5	27	1.48
249278--249321	19	2.3	19	92	0	70	59	6	4	29	1.44
249530--249570	21	2.0	21	85	4	57	51	7	7	34	1.58
258786--258853	31	2.1	34	89	10	106	50	0	10	39	1.37
260867--260912	21	2.1	22	88	8	67	30	2	0	67	1.03
262394--262457	28	2.3	28	86	0	83	21	20	25	32	1.97
264705--264777	37	2.0	37	83	5	94	49	1	4	45	1.29
266970--266999	7	4.3	7	100	0	60	16	0	30	53	1.44
269258--269282	2	12.5	2	100	0	50	52	0	0	48	1.00
270615--270774	46	3.7	46	73	17	160	31	16	13	38	1.87
270615--270844	44	5.3	43	70	13	132	30	19	13	36	1.90
271797--271845	20	2.4	21	76	10	57	46	2	0	51	1.12
273359--273407	22	2.2	23	85	3	64	55	2	2	40	1.23
278088--278215	63	2.0	63	95	3	231	34	7	20	38	1.80
278695--278726	16	2.1	16	94	5	57	34	0	0	65	0.93
280717--280833	61	1.9	61	98	0	225	29	10	10	49	1.70
291739--292486	240	3.1	240	99	0	1489	24	17	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294032--294080	26	1.9	25	91	4	80	34	6	6	53	1.51
296886--296930	20	2.2	20	84	0	54	44	4	2	48	1.35
298251--298332	32	2.6	31	81	9	94	12	13	32	41	1.81
302562--302608	23	2.0	23	100	0	94	29	25	4	40	1.75
309704--309775	2	36.5	2	97	2	137	51	0	0	48	1.00
310845--310882	20	1.9	20	89	10	60	50	0	5	44	1.24
311704--311744	18	2.2	20	86	8	59	26	4	14	53	1.61
314693--314726	16	2.0	18	88	11	54	41	5	0	52	1.25
315714--315774	29	2.3	25	75	20	61	37	16	14	31	1.89
321642--321677	18	2.0	18	88	0	54	50	0	2	47	1.15
323490--323606	57	2.0	58	86	1	164	23	28	9	39	1.85
326324--326363	21	1.9	21	94	0	71	32	27	17	22	1.96
326446--326581	58	2.3	58	91	0	209	37	20	12	29	1.89
326371--326617	137	1.8	137	90	5	401	36	21	12	29	1.91
326923--326970	21	2.3	21	100	0	96	25	12	27	35	1.92
327535--327575	13	3.5	13	75	25	54	70	7	0	21	1.11
332949--333000	23	2.3	23	86	0	68	19	17	21	42	1.89
338052--338118	23	2.9	23	79	0	80	47	16	8	26	1.76
338230--338273	3	14.7	3	100	0	88	65	0	0	34	0.93
338350--338427	29	2.7	29	89	0	120	39	3	3	52	1.38
345629--345670	2	21.0	2	100	0	84	50	0	50	0	1.00
347698--347727	16	1.9	16	93	6	53	43	0	13	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350530--350671	60	2.3	60	78	7	153	33	24	4	37	1.77
350948--351006	27	2.2	27	84	0	73	47	8	8	35	1.64
355780--358807	896	3.4	896	95	1	5324	33	15	23	27	1.95
371030--371070	16	2.5	16	88	4	55	53	0	2	43	1.13
372503--372538	17	2.1	17	89	5	54	55	0	5	38	1.23
378415--378451	14	2.7	14	91	4	58	64	0	0	35	0.94
384152--384194	22	2.0	22	100	0	86	41	9	18	30	1.82
385006--385057	21	2.5	21	81	3	61	38	19	25	17	1.93
385046--385159	20	5.7	20	81	6	104	31	24	18	25	1.97
385043--385159	61	1.9	61	83	0	153	33	23	17	24	1.97
385740--385832	19	5.1	19	75	15	88	12	23	19	44	1.85
385745--385807	33	1.9	33	93	0	108	11	23	22	42	1.85
387285--387415	63	2.1	63	98	0	253	21	18	37	22	1.94
387988--388160	42	4.1	42	80	0	202	22	38	16	23	1.93
387985--388160	84	2.1	84	97	0	334	22	38	16	23	1.93
388055--388170	21	5.5	21	66	8	56	24	33	19	22	1.97
388018--388190	42	4.1	41	74	8	152	23	36	17	21	1.95
388130--388190	21	3.0	20	73	7	59	24	36	18	21	1.95
387988--388190	84	2.4	84	92	1	309	23	36	17	23	1.95
389549--389584	14	2.6	14	95	0	63	30	0	25	44	1.54
389691--389737	19	2.5	19	96	0	85	44	21	21	12	1.85
389762--389912	19	8.7	19	62	21	62	15	21	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389766--389892	33	3.9	32	84	8	175	15	22	18	43	1.88
389759--389891	66	2.0	66	94	0	230	17	21	18	42	1.90
392184--392208	12	2.1	12	100	0	50	0	28	0	72	0.86
393411--393480	20	3.5	20	94	1	124	32	25	24	17	1.96
393411--393487	39	2.0	40	89	2	120	37	23	22	16	1.94
393506--393589	19	4.7	19	90	10	133	14	21	17	46	1.84
393506--393602	38	2.8	33	84	14	140	13	22	18	45	1.84
393595--393633	20	2.0	20	89	0	60	12	7	30	48	1.69
393716--393752	14	2.6	14	86	0	56	48	21	0	29	1.50
395600--395665	20	3.3	20	80	0	60	40	24	18	16	1.90
395619--395686	20	3.5	20	77	2	66	39	22	22	16	1.92
395675--395732	14	3.9	14	79	16	71	48	24	17	10	1.78
395659--395737	32	2.4	33	95	2	142	46	22	18	11	1.81
395760--395823	14	4.4	14	78	16	67	12	15	21	50	1.77
395747--395839	32	2.8	33	90	3	152	13	18	20	47	1.82
395812--395867	20	2.9	19	81	2	58	17	21	19	41	1.91
396360--396404	18	2.5	18	88	0	72	13	15	44	26	1.83
397725--397783	20	3.0	20	87	0	73	42	22	18	16	1.89
398044--398087	22	2.0	22	95	0	79	18	15	45	20	1.85
398255--398350	20	4.6	22	73	12	78	22	16	22	37	1.94
398255--398352	41	2.4	41	85	0	142	22	16	22	38	1.92
398255--398370	41	2.8	41	81	2	108	21	18	22	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398420--398460	21	2.0	21	85	0	55	34	31	17	17	1.93
407635--407753	35	3.3	36	88	5	170	43	20	3	32	1.68
407686--407746	21	3.2	21	65	29	64	42	21	4	31	1.74
407637--407781	35	4.1	36	81	13	133	41	19	5	33	1.74
416510--416649	59	2.4	59	79	8	142	43	5	19	31	1.74
417098--417183	32	2.7	32	87	5	113	50	8	4	37	1.53
417104--417205	32	3.2	31	83	6	98	50	8	3	37	1.52
417392--417478	32	2.8	31	81	6	95	40	5	9	44	1.60
420468--420553	37	2.3	40	84	9	110	33	4	18	43	1.71
425060--425120	21	3.2	21	65	29	64	32	3	21	42	1.69
425059--425169	35	3.1	34	88	6	150	33	3	19	43	1.69
431875--431909	2	17.5	2	93	0	61	48	0	2	48	1.16
436039--436089	25	2.0	25	88	0	75	37	25	17	19	1.94
441515--441557	21	2.0	21	95	0	77	4	23	6	65	1.37
446166--446443	73	3.8	73	77	10	266	38	2	6	52	1.42
446170--446435	147	1.8	146	82	5	349	37	3	6	52	1.42
447727--447994	120	2.2	120	78	3	288	35	19	5	40	1.74
448806--448856	25	2.0	26	88	3	77	62	0	0	37	0.95
448777--448844	35	1.9	35	81	0	82	60	0	1	38	1.06
452799--452839	8	5.2	8	82	5	57	34	0	29	36	1.58
452907--453535	128	4.9	128	97	0	1183	23	25	19	32	1.98
453791--453820	14	2.1	14	93	0	51	30	6	10	53	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453936--454035	34	3.0	33	83	2	128	39	2	4	55	1.30
454555--454648	21	4.5	21	92	5	129	20	25	35	19	1.96
456424--456493	31	2.2	32	82	7	81	60	2	0	37	1.12
456416--456494	34	2.4	32	79	10	88	60	2	0	36	1.10
457649--457689	14	3.0	14	82	10	50	63	2	0	34	1.08
460034--460306	29	9.4	28	79	10	214	44	18	2	34	1.65
460034--460306	58	4.7	57	80	9	259	44	18	2	34	1.65
460034--460306	146	1.9	147	81	9	344	44	18	2	34	1.65
460034--460306	116	2.4	115	80	8	286	44	18	2	34	1.65
467683--467773	28	3.1	29	78	9	96	38	12	4	45	1.62

Tables:   1   2   3   4