Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008024.1 Hibiscus syriacus cultivar Beakdansim tig00110499_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1023309

Tables:   1   2   3   4   

This is table  4  of  4  ( 383 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
972639--972699
3
21.0
3
85
12
83
37
0
0
62
0.96
977244--977316
22
3.4
22
73
16
62
19
15
9
56
1.66
981666--981742
22
3.5
22
92
0
136
35
10
14
40
1.80
982418--983141
76
9.6
76
96
0
1307
24
20
21
34
1.97
983080--983176
45
2.2
45
88
0
140
23
21
16
38
1.93
983308--983383
15
5.7
14
72
21
65
44
0
0
55
0.99
983306--983383
24
3.1
25
77
15
81
43
0
0
56
0.99
983306--983383
27
3.1
25
77
15
81
43
0
0
56
0.99
983306--983372
3
23.0
3
79
11
68
41
0
0
58
0.98
984644--984712
28
2.4
28
81
9
77
28
0
5
65
1.16
984622--984728
49
2.2
47
81
9
117
29
1
4
63
1.25
986815--986857
11
3.7
11
84
6
50
34
2
0
62
1.08
996877--996926
22
2.3
21
83
10
57
64
12
6
18
1.47
997840--997877
18
2.1
19
85
5
51
71
7
5
15
1.28
997892--997929
14
2.8
13
84
7
58
0
15
7
76
1.01
999689--999719
7
4.6
7
96
4
55
74
0
0
25
0.82
1000019--1000091
32
2.3
32
90
0
110
36
21
26
15
1.93
1001068--1001350
143
2.0
143
93
0
485
25
18
13
42
1.87
1006501--1006550
17
3.0
17
97
2
93
28
12
12
48
1.76
1011474--1011623
31
4.9
30
76
11
126
30
30
24
14
1.95
1011474--1011641
62
2.7
62
78
5
162
32
30
23
14
1.94
1011504--1011642
31
4.5
31
78
5
138
32
29
23
14
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1014046--1014104
22
2.7
23
79
10
70
27
27
28
16
1.97

Tables:   1   2   3   4

The End!