genome.fa.s8065.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008065.1 Hibiscus syriacus cultivar Beakdansim tig00110562_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  676718

Tables:   1   2   3   

This is table  2  of  3  ( 282 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296954--296991	7	5.4	7	93	0	67	28	28	26	15	1.96
296988--297045	5	10.8	5	78	14	62	6	22	51	18	1.70
296981--297045	22	3.0	22	100	0	130	9	23	49	18	1.76
297044--297082	19	2.1	19	90	0	60	25	33	23	17	1.96
297042--297140	9	10.3	9	72	10	54	29	27	26	17	1.97
297058--297142	29	2.9	29	82	1	107	28	25	25	20	1.99
297103--297141	21	1.9	21	89	5	62	33	23	25	17	1.96
297067--297141	9	7.8	9	76	14	60	30	25	25	18	1.98
297863--298375	182	2.8	181	91	1	803	43	12	15	28	1.83
301549--301575	2	13.5	2	100	0	54	51	0	0	48	1.00
304278--304317	20	2.0	20	85	0	53	35	12	2	50	1.54
304643--304732	2	45.0	2	100	0	180	50	0	0	50	1.00
307735--307788	21	2.6	21	100	0	108	5	18	24	51	1.67
310087--310202	24	4.8	24	87	6	155	24	17	18	40	1.91
312952--313161	20	10.4	20	71	10	104	40	22	17	19	1.91
313013--313204	20	9.4	20	75	5	145	39	22	18	20	1.93
312952--313206	40	6.3	41	80	6	245	38	23	18	19	1.93
312952--313206	81	3.1	81	79	7	243	38	23	18	19	1.93
313764--313839	20	3.8	20	85	5	93	51	18	18	11	1.76
313867--313934	19	3.8	19	74	21	76	10	19	17	52	1.72
314001--314055	25	2.2	26	81	15	71	16	9	20	54	1.68
315625--316004	94	4.1	94	95	1	656	21	12	18	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316121--316158	19	2.0	19	100	0	76	47	31	15	5	1.68
316164--316218	19	2.8	20	80	5	67	12	20	21	45	1.84
318087--318123	14	2.6	14	88	12	58	32	0	18	48	1.49
318300--318372	20	3.7	19	83	5	92	16	21	20	41	1.90
318359--318419	14	4.0	14	69	19	50	13	21	19	45	1.84
318300--318433	33	3.8	33	83	7	151	14	21	20	43	1.88
320952--321003	24	2.2	24	82	0	59	36	21	19	23	1.95
321898--322058	20	8.0	20	78	9	148	19	19	23	37	1.94
321906--322058	40	3.8	40	82	5	193	18	20	24	36	1.95
321898--322017	60	2.0	61	86	1	170	19	20	23	37	1.94
321906--322058	81	1.9	80	84	6	202	18	20	24	36	1.95
323119--323632	173	3.0	173	87	2	728	23	14	21	40	1.91
327458--327486	12	2.4	12	100	0	58	55	10	0	34	1.34
329076--329108	2	16.5	2	100	0	66	48	0	0	51	1.00
329102--329142	21	2.0	21	86	13	59	24	12	0	63	1.28
329207--329254	18	2.6	17	78	12	51	29	2	4	64	1.23
341198--341245	25	1.9	25	83	8	62	33	2	0	64	1.05
341198--341241	17	2.4	18	85	7	54	31	2	0	65	1.05
341728--341776	2	24.5	2	100	0	98	48	0	0	51	1.00
342599--342676	34	2.3	34	95	0	138	19	7	6	66	1.39
348750--348787	20	1.9	20	88	0	58	55	2	7	34	1.43
352229--352262	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357264--357415	64	2.4	64	100	0	304	46	11	5	36	1.64
361822--361878	24	2.4	24	77	11	62	19	17	14	49	1.80
366034--366096	32	1.9	33	87	3	92	22	12	14	50	1.76
366040--366098	16	3.7	16	76	0	55	22	13	16	47	1.82
367347--367648	157	1.9	158	97	0	579	23	19	7	49	1.74
368509--368550	20	2.1	20	82	8	50	38	2	2	57	1.25
369813--369985	90	1.9	88	81	9	208	41	16	9	32	1.80
374913--374947	18	1.9	18	94	0	61	28	31	2	37	1.72
377229--377259	16	1.9	16	93	0	53	51	12	0	35	1.40
393146--393430	142	2.0	142	95	0	516	26	22	12	38	1.90
400859--400887	15	2.0	15	93	6	51	58	13	13	13	1.63
400888--400930	23	1.9	22	86	13	61	34	2	18	44	1.63
407923--408357	218	2.0	217	99	0	852	31	23	11	34	1.90
415014--415107	27	3.5	27	100	0	188	47	0	7	44	1.31
421479--421674	35	5.6	34	74	18	129	43	8	4	43	1.54
423613--423789	54	3.3	53	82	3	192	27	25	19	27	1.99
435660--435704	22	2.0	23	95	4	83	40	6	22	31	1.80
441854--441944	37	2.5	37	96	1	166	34	16	19	29	1.94
444746--444792	18	2.9	15	80	17	58	51	0	2	46	1.13
455040--455086	19	2.5	17	83	16	58	53	0	6	40	1.27
457832--457897	26	2.4	26	85	12	80	34	7	1	56	1.37
458530--458581	24	2.2	24	96	0	95	59	0	21	19	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459374--459406	16	2.0	17	88	5	50	27	0	21	51	1.48
462257--462308	26	2.0	26	88	0	77	11	26	21	40	1.87
478602--479092	243	2.0	244	95	0	876	37	19	14	29	1.91
487286--487400	60	1.9	60	84	7	153	41	11	13	33	1.79
489513--489605	45	2.1	45	95	0	168	32	20	9	37	1.85
499153--499202	10	5.1	10	76	13	59	20	22	28	30	1.98
499153--499204	19	2.7	20	90	3	79	19	25	26	28	1.98
499199--499255	17	3.4	17	97	0	105	17	43	22	15	1.87
499245--499280	7	5.4	7	87	12	58	16	30	30	22	1.96
499245--499280	13	2.8	13	100	0	72	16	30	30	22	1.96
500150--500273	63	2.0	63	84	6	162	16	27	29	26	1.97
500150--500234	31	2.7	31	81	1	98	14	29	30	25	1.95
503280--503315	13	2.6	15	79	20	51	58	0	5	36	1.22
506800--506860	27	2.3	27	97	0	113	32	11	19	36	1.88
507577--507607	16	1.9	16	100	0	62	19	9	19	51	1.74
508934--508967	14	2.4	14	95	0	59	44	14	26	14	1.84
512827--512868	20	2.0	21	90	4	68	40	9	14	35	1.78
513951--513999	24	2.0	24	100	0	98	34	12	12	40	1.80
527674--527749	11	6.9	11	81	0	80	36	1	17	44	1.57
527674--527749	22	3.5	22	81	0	89	36	1	17	44	1.57
527674--527749	33	2.3	33	88	0	116	36	1	17	44	1.57
530683--530722	19	2.1	19	100	0	80	35	15	20	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531399--531506	35	3.0	36	94	4	191	44	20	5	29	1.74
536045--536104	21	3.2	21	63	30	53	43	18	6	31	1.76
536004--536110	35	3.0	36	90	4	171	45	18	5	29	1.72
536440--536489	21	2.4	21	86	0	73	18	20	28	34	1.95
536527--536565	21	1.9	20	84	5	51	28	17	12	41	1.87
536604--536628	6	4.2	6	100	0	50	36	48	16	0	1.46
537384--537540	42	3.7	42	90	5	237	35	24	19	20	1.96
537384--537524	21	6.6	21	72	16	112	34	25	19	19	1.96
537384--537540	86	1.9	82	88	5	233	35	24	19	20	1.96
537536--537588	21	2.5	21	93	0	88	16	20	32	30	1.95
543449--543491	18	2.3	19	88	4	61	13	0	9	76	1.01
543383--543542	74	2.1	76	79	6	184	20	5	12	61	1.51
543587--543628	16	2.7	16	82	14	52	19	0	4	76	0.96
545114--545211	33	3.0	33	87	3	135	41	25	25	7	1.80
553664--553697	17	2.1	16	94	5	59	38	5	14	41	1.70
557866--557906	8	5.2	8	82	5	57	34	0	29	36	1.58
557974--558705	126	5.8	126	97	1	1353	22	25	19	32	1.97
559092--559189	34	3.0	34	79	7	121	38	3	4	54	1.35
559714--559793	21	3.8	21	93	3	117	21	22	37	18	1.94
559805--559852	21	2.3	21	85	0	60	22	12	39	25	1.89
564452--564510	20	2.8	20	82	10	57	44	1	0	54	1.10
565896--566174	142	2.0	144	94	1	499	32	9	20	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569697--569764	31	2.2	31	89	0	109	22	32	14	30	1.94
575193--575249	20	2.8	21	71	7	64	22	14	1	61	1.42
575356--575406	24	2.1	24	81	0	57	58	0	0	41	0.98
575359--575401	13	3.3	13	87	6	52	60	0	0	39	0.97
575924--576331	31	13.7	29	74	11	219	52	1	5	40	1.34
576014--576092	27	2.8	27	88	5	113	45	2	7	44	1.45
576052--576331	30	9.4	30	75	9	195	53	1	4	40	1.30
576050--576340	89	3.3	90	78	13	305	53	1	4	39	1.32
575924--576331	178	2.3	178	81	7	449	52	1	5	40	1.34
576633--576725	46	2.1	46	91	4	154	26	31	7	34	1.84

Tables:   1   2   3