Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008065.1 Hibiscus syriacus cultivar Beakdansim tig00110562_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  676718

Tables:   1   2   3   

This is table  3  of  3  ( 282 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
577407--577464
10
5.8
10
83
0
62
22
29
0
48
1.51
577407--577464
20
2.9
20
84
0
71
22
29
0
48
1.51
577408--577464
30
1.9
30
85
7
80
22
28
0
49
1.50
581441--581497
27
2.1
27
93
0
96
15
43
12
28
1.83
590958--591018
7
9.1
7
75
7
56
32
1
0
65
1.02
590942--591015
14
5.4
14
73
12
64
36
1
0
62
1.04
590934--591016
21
3.8
22
78
13
82
37
1
0
61
1.04
590942--591036
30
3.3
29
75
25
94
36
1
0
62
1.03
591423--591448
9
2.9
9
100
0
52
76
0
0
23
0.78
594976--595086
48
2.3
48
85
3
134
18
14
17
50
1.78
595013--595082
12
5.8
12
76
6
70
15
12
18
52
1.74
595014--595086
24
3.0
24
77
0
92
17
10
17
53
1.72
597662--597830
63
2.7
63
94
0
284
43
9
43
4
1.56
601436--601471
18
2.0
18
89
10
56
16
16
5
61
1.53
605029--605093
32
2.0
32
87
0
94
40
16
13
29
1.88
624976--625018
22
2.0
22
86
4
61
60
6
13
18
1.55
627402--627474
39
1.9
39
86
8
107
41
10
23
24
1.86
628356--628403
2
24.5
2
95
4
89
50
0
0
50
1.00
630709--630762
23
2.3
25
75
12
60
59
1
3
35
1.26
632484--632577
9
9.8
9
72
13
62
17
26
27
28
1.97
632484--632522
21
1.9
21
89
5
62
17
25
23
33
1.96
632505--632582
19
4.1
18
78
14
77
15
28
29
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
632484--632567
29
2.8
30
82
7
100
17
27
27
27
1.98
632544--632582
9
4.2
9
83
6
51
15
28
30
25
1.96
632579--632617
17
2.3
17
86
0
51
20
38
25
15
1.92
639785--639883
29
3.4
28
83
5
117
16
25
27
31
1.96
639784--639877
19
4.8
19
79
8
100
17
23
27
31
1.96
639785--639883
10
10.3
9
79
12
81
16
25
27
31
1.96
654570--654608
20
1.9
21
84
5
53
53
2
5
38
1.37
655763--655801
18
2.2
17
90
4
60
23
25
0
51
1.49
656118--656211
31
3.0
31
92
0
143
37
22
19
21
1.95
664940--664995
22
2.5
22
82
8
60
21
7
8
62
1.48
668894--668934
5
7.8
5
84
10
55
4
21
53
19
1.63
668933--669010
19
4.1
19
80
14
97
26
29
26
16
1.97
668931--669009
10
8.3
9
83
6
86
26
29
29
15
1.96
668932--669029
29
3.4
28
83
8
99
29
26
27
16
1.97
668937--669030
9
9.7
10
80
11
90
29
26
26
17
1.97
676126--676166
5
7.8
5
84
10
55
4
21
53
19
1.63
676119--676167
22
2.2
22
100
0
98
10
22
48
18
1.77
676163--676252
10
9.3
9
77
11
72
27
26
28
16
1.97
676165--676232
19
3.5
20
86
11
90
26
29
27
16
1.97
676176--676253
20
4.0
20
82
14
83
29
25
26
17
1.98

Tables:   1   2   3

The End!