genome.fa.s8072.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008072.1 Hibiscus syriacus cultivar Beakdansim tig00110570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1263316

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 528 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1219775--1219848	29	2.6	29	91	2	114	29	10	16	43	1.82
1219909--1220178	30	8.3	29	68	21	137	32	10	12	43	1.78
1219857--1220044	94	2.0	97	84	7	251	31	11	13	43	1.80
1219931--1220289	67	5.4	67	95	0	630	32	11	11	44	1.76
1220520--1220643	63	2.0	63	85	3	169	33	12	11	43	1.77
1220800--1220841	15	2.9	15	89	6	61	30	21	4	42	1.73
1221043--1221181	66	2.1	65	82	5	172	26	22	14	36	1.92
1221340--1221393	28	1.9	28	85	7	74	22	16	16	44	1.86
1221406--1221659	130	2.0	129	92	2	420	27	30	18	22	1.98
1221419--1221686	40	6.2	43	68	16	133	27	31	17	23	1.97
1221854--1221930	3	24.0	3	82	15	84	35	0	0	64	0.93
1221857--1221922	16	3.8	18	86	13	77	33	0	0	66	0.92
1221853--1221924	19	3.5	20	83	16	94	33	0	0	66	0.92
1224870--1224910	13	3.1	13	85	3	55	26	0	0	73	0.84
1230108--1230167	30	2.0	30	100	0	120	26	23	20	30	1.98
1233963--1233987	2	12.5	2	100	0	50	52	0	0	48	1.00
1240876--1240927	20	2.6	20	96	0	95	38	26	13	21	1.90
1240918--1241015	21	4.8	20	73	10	72	37	21	19	21	1.94
1240982--1241175	20	9.6	20	81	5	221	35	25	19	19	1.95
1240982--1241175	60	3.2	60	83	0	253	35	25	19	19	1.95
1241556--1241626	33	2.2	33	92	0	115	11	22	18	47	1.80
1241747--1241801	14	3.6	14	73	21	56	41	23	25	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1241747--1241817	33	2.2	33	94	0	124	43	25	22	8	1.81
1241813--1241910	19	5.7	19	70	22	81	10	24	22	42	1.84
1241835--1241924	14	5.7	14	74	23	81	8	25	23	42	1.83
1241818--1241932	33	3.5	33	95	0	212	9	24	20	45	1.81
1243631--1244010	185	2.0	186	99	0	753	22	12	18	46	1.83
1243631--1244010	93	4.1	93	99	0	753	22	12	18	46	1.83
1244054--1244182	19	7.3	19	75	17	125	45	28	17	8	1.77
1244090--1244182	33	2.8	32	91	4	150	46	27	18	7	1.76
1244054--1244182	52	2.5	52	74	14	140	45	28	17	8	1.77
1244178--1244312	19	7.6	19	73	16	119	11	19	22	46	1.81
1244200--1244256	14	3.7	14	77	20	60	10	21	22	45	1.82
1244183--1244275	33	2.8	33	95	0	168	10	20	21	47	1.80
1246129--1246201	38	1.9	38	97	0	137	28	1	16	53	1.51
1246124--1246188	19	3.4	19	64	8	51	24	1	15	58	1.46
1246183--1246218	14	2.6	14	95	0	63	33	0	22	44	1.53
1246325--1246426	19	5.6	19	84	13	151	44	17	23	14	1.86
1246455--1246780	19	18.4	19	80	15	405	14	20	17	47	1.82
1246433--1246752	52	6.0	52	94	4	550	14	21	16	46	1.83
1246455--1246780	71	4.6	72	82	13	389	14	20	17	47	1.82
1246433--1246752	161	2.0	157	93	3	552	14	21	16	46	1.83
1246474--1246780	33	8.8	33	80	12	280	14	20	17	47	1.82
1249084--1249108	13	1.9	13	100	0	50	0	24	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1249283--1249329	24	2.0	24	87	8	69	38	21	14	25	1.92
1250000--1250368	20	18.5	20	86	4	458	20	18	26	34	1.96
1253793--1253844	22	2.4	21	78	12	61	51	3	1	42	1.31
1258078--1258240	83	2.0	83	87	0	236	38	6	10	44	1.64

Tables:   1   2   3   4   5

The End!