genome.fa.s8073.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008073.1 Hibiscus syriacus cultivar Beakdansim tig00110575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  510636

Tables:   1   2   3   

This is table  1  of  3  ( 268 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731--891	81	2.0	83	86	2	227	38	6	10	44	1.64
7561--7597	17	2.2	17	100	0	74	29	24	27	18	1.98
11252--11285	6	5.7	6	100	0	68	32	14	35	17	1.91
13115--13162	21	2.3	21	96	0	87	27	18	12	41	1.86
17763--17810	21	2.3	21	92	0	87	29	18	10	41	1.84
19222--19271	22	2.3	22	100	0	100	24	4	20	52	1.63
25786--25941	42	3.7	42	98	0	294	16	37	18	27	1.92
25787--25974	84	2.2	83	89	2	250	18	38	17	26	1.92
31802--31835	16	2.1	16	94	0	59	32	26	8	32	1.87
35476--35526	21	2.4	22	83	6	70	21	0	7	70	1.12
39159--39193	17	2.0	17	88	5	52	54	0	0	45	0.99
39938--39976	16	2.4	16	86	0	60	12	25	12	48	1.77
40476--40579	27	3.6	28	77	16	106	59	0	0	39	1.04
40524--40569	10	4.5	10	82	12	58	65	0	0	34	0.93
40543--40581	2	20.5	2	87	10	55	56	0	0	43	0.99
40479--40582	22	4.7	22	79	11	106	58	0	0	40	1.04
40623--40648	12	2.2	12	100	0	52	50	23	11	15	1.76
40822--40862	7	5.9	7	83	11	57	17	0	26	56	1.41
40818--40862	21	2.1	21	91	0	72	17	0	26	55	1.42
40824--40876	21	2.5	21	84	0	61	22	0	22	54	1.45
40818--40908	7	13.3	7	73	4	51	21	0	28	49	1.50
40983--41035	13	4.3	13	83	13	76	41	0	7	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41009--41049	20	2.1	19	86	4	55	39	4	4	51	1.45
41852--41909	14	4.1	14	75	0	53	24	0	27	48	1.51
42580--42761	4	45.5	4	91	0	256	43	24	6	25	1.78
41922--43607	842	2.0	846	97	0	3200	39	12	8	40	1.73
43424--46260	4	716.5	4	97	2	5250	49	25	0	25	1.56
46811--46844	2	17.0	2	93	0	59	47	2	0	50	1.16
46898--46923	2	13.0	2	100	0	52	50	50	0	0	1.00
47290--47353	23	2.5	26	78	17	80	26	18	14	40	1.89
52917--52959	20	2.2	20	100	0	86	9	44	0	46	1.35
54966--55277	62	5.0	60	69	15	186	45	10	5	38	1.62
54988--55345	190	1.9	190	90	2	576	46	10	5	36	1.63
74827--75096	67	4.0	67	80	7	287	43	26	8	20	1.81
85226--85297	24	3.1	24	94	4	121	38	6	9	44	1.64
85566--85681	58	2.0	56	85	3	151	41	7	12	38	1.71
93439--93581	21	6.7	21	82	9	164	22	36	17	23	1.95
93439--93604	44	3.9	42	90	3	181	22	36	17	23	1.95
93480--93604	44	2.9	44	93	2	209	22	36	18	22	1.95
95322--95366	23	2.0	23	90	0	72	24	26	26	22	2.00
95334--95648	149	2.1	149	98	1	605	34	20	17	27	1.95
96326--96448	15	8.2	15	92	0	210	32	32	20	14	1.93
96533--96606	29	2.6	29	95	2	132	20	21	14	43	1.88
96622--96667	12	3.8	12	91	0	56	39	26	6	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96622--96668	24	2.0	24	87	8	69	38	25	6	29	1.81
96635--96668	12	2.8	12	95	0	59	41	26	2	29	1.70
96979--97203	64	3.5	63	83	6	215	26	20	20	31	1.98
103387--103509	15	8.2	15	94	0	210	31	33	21	13	1.92
103594--103667	29	2.6	29	97	2	141	18	21	16	43	1.88
104033--104257	64	3.5	63	82	6	206	26	20	21	31	1.98
106479--106523	21	2.1	21	87	0	63	15	24	28	31	1.96
107517--107564	19	2.5	20	82	3	62	52	6	12	29	1.63
108329--108366	20	1.9	20	94	0	67	42	7	10	39	1.69
108691--108730	21	1.9	21	84	0	53	27	10	12	50	1.72
108952--109051	21	4.7	21	72	16	89	23	34	19	24	1.97
109492--109539	22	2.2	22	84	0	60	39	14	18	27	1.90
114939--115465	262	2.0	262	99	0	1045	33	13	16	35	1.88
115743--115828	27	2.9	31	79	15	108	45	1	22	31	1.60
116353--116410	19	2.9	20	85	10	66	58	1	12	27	1.43
116377--116424	22	2.1	23	84	3	62	58	2	12	27	1.46
116377--116430	22	2.4	24	78	12	60	59	1	12	25	1.44
116393--116441	23	2.1	23	88	0	71	53	4	16	26	1.61
120366--120423	21	2.7	21	79	12	55	56	3	1	37	1.26
120367--120424	22	2.7	23	73	10	59	56	3	1	37	1.26
121688--121717	7	4.3	7	91	0	51	23	0	26	50	1.50
127464--127521	28	2.1	28	83	3	73	34	17	10	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133550--133597	23	2.1	23	88	0	69	35	12	18	33	1.89
134325--134361	18	2.1	18	89	0	56	51	10	5	32	1.60
134565--134629	23	2.8	23	90	0	94	38	18	7	35	1.80
134983--135036	23	2.5	20	75	18	54	42	18	1	37	1.61
134998--135060	23	2.7	23	90	0	90	38	19	6	36	1.77
134567--136021	431	3.4	431	98	0	2838	38	13	8	39	1.75
135429--135491	23	2.7	23	90	0	90	38	19	6	36	1.77
135845--135898	23	2.5	20	75	18	54	42	18	1	37	1.61
135860--135922	23	2.7	23	90	0	90	38	19	6	36	1.77
138481--139033	184	3.0	184	98	0	1070	33	16	14	35	1.89
139529--139573	19	2.4	19	92	0	72	57	8	2	31	1.41
141361--141426	33	2.0	33	87	0	96	24	45	1	28	1.62
143547--143599	24	2.2	24	83	6	63	26	7	13	52	1.66
143910--143955	20	2.3	20	89	10	76	17	17	10	54	1.70
147972--148004	14	2.4	14	94	0	57	6	18	3	72	1.18
155881--155945	33	2.0	33	96	0	121	29	18	16	35	1.93
156701--156766	2	33.0	2	96	0	123	48	0	1	50	1.10
158991--159028	17	2.4	17	86	8	53	39	15	5	39	1.70
164880--164912	12	2.8	12	90	4	50	0	15	57	27	1.38
165028--165063	6	6.2	6	96	3	65	13	86	0	0	0.58
189962--189988	13	2.1	13	100	0	54	48	0	0	51	1.00
192965--193020	18	3.1	18	89	0	94	16	48	21	14	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194317--194351	18	1.9	18	88	0	52	54	0	17	28	1.43
198042--198118	18	4.3	18	91	0	127	19	48	20	11	1.80
199435--199469	18	1.9	18	88	0	52	54	0	17	28	1.43
207554--207601	11	4.2	11	82	17	62	70	2	0	27	0.98
207553--207603	15	3.5	15	76	23	56	70	1	0	27	0.98
208040--208291	37	7.1	36	73	13	211	40	13	19	26	1.88
207973--208148	67	2.5	68	82	9	180	41	12	19	26	1.87
208059--208123	20	3.4	20	68	24	59	41	12	21	24	1.87
208040--208291	72	3.6	72	72	15	238	40	13	19	26	1.88
210401--210494	24	3.8	24	71	12	82	5	7	5	81	0.97
210412--210496	10	8.7	10	73	19	63	5	7	4	82	0.95
210429--210455	6	4.5	6	100	0	54	0	0	14	85	0.61
210406--210523	12	10.2	11	74	14	62	5	10	4	80	1.00
210406--210503	18	5.7	17	79	9	101	5	8	4	82	0.93
210401--210502	26	4.0	26	72	17	72	4	8	4	81	0.98
210467--210517	15	3.2	15	83	10	57	5	13	0	80	0.89
213484--213510	12	2.2	12	100	0	54	55	0	7	37	1.28
214182--215184	528	1.9	524	97	0	1754	38	11	13	36	1.81
216701--216780	3	26.3	3	83	7	99	61	1	0	37	1.04
216950--217660	76	8.9	76	88	8	931	35	21	18	24	1.95
217226--217639	164	2.5	164	97	0	765	35	21	18	25	1.95
218330--218384	22	2.5	22	90	0	92	38	14	12	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219722--219891	74	2.3	76	84	3	220	29	20	16	34	1.94
221094--221285	93	2.1	93	85	3	262	37	19	13	29	1.90
223680--223717	2	19.0	2	100	0	76	50	0	0	50	1.00
230200--230268	3	22.3	3	82	5	75	59	1	0	39	1.06
231249--231294	6	7.5	6	85	4	56	78	0	0	21	0.76
231668--231987	37	9.1	37	70	16	234	39	13	19	28	1.89
231735--231987	36	7.1	36	74	12	229	39	13	19	28	1.89
231735--231988	73	3.6	73	70	12	249	38	12	19	28	1.89
232458--232557	40	2.4	42	83	5	114	23	17	26	34	1.96
233467--233496	14	2.1	14	100	0	60	13	6	13	66	1.43

Tables:   1   2   3