genome.fa.s8073.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008073.1 Hibiscus syriacus cultivar Beakdansim tig00110575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  510636

Tables:   1   2   3   

This is table  2  of  3  ( 268 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234139--234178	20	2.0	20	100	0	80	10	10	5	75	1.19
234112--234200	18	4.8	19	78	10	78	5	13	4	76	1.12
238768--238793	9	2.9	9	100	0	52	88	0	0	11	0.52
238768--238818	18	2.6	19	81	9	59	78	0	1	19	0.85
239759--239791	16	2.1	16	100	0	66	57	24	12	6	1.57
239863--239921	16	3.7	16	95	0	109	55	22	13	8	1.64
240931--241005	24	3.1	24	90	0	96	53	22	12	12	1.70
240944--240991	10	4.4	10	78	19	51	54	25	12	8	1.65
240951--241006	14	4.3	14	80	17	75	50	26	14	8	1.72
242693--242726	18	1.9	17	88	5	50	50	0	0	50	1.00
256743--256780	20	1.9	20	84	10	51	36	10	7	44	1.68
265599--265638	21	1.9	22	90	10	66	12	10	40	37	1.77
266124--266181	18	3.1	18	83	16	73	51	6	12	29	1.65
269107--269182	20	3.7	20	86	10	100	14	6	39	39	1.72
269756--269818	22	2.8	22	92	2	99	33	22	17	26	1.96
270393--270484	23	4.0	23	81	0	94	30	23	23	21	1.99
271143--271187	19	2.4	19	84	0	63	20	28	20	31	1.97
275441--275486	6	7.7	6	80	0	56	0	47	8	43	1.34
275444--275485	18	2.3	18	100	0	84	0	50	9	40	1.35
277290--277354	23	2.8	23	85	0	94	27	27	26	18	1.98
277655--277712	25	2.3	25	79	8	64	39	8	13	37	1.76
283694--283733	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284815--284889	30	2.5	31	78	10	93	46	2	2	48	1.30
284887--284959	28	2.6	27	89	8	103	54	5	0	39	1.23
298450--298476	7	3.9	7	100	0	54	29	0	0	70	0.88
299907--299951	16	2.8	17	80	12	51	31	4	24	40	1.75
300038--300466	83	5.2	83	80	5	438	31	17	19	31	1.95
300108--300466	165	2.2	166	82	2	425	32	18	18	30	1.95
301313--301380	27	2.5	26	83	7	82	57	23	2	16	1.53
301412--301482	32	2.2	32	89	0	106	59	21	2	16	1.50
302305--302365	15	4.1	15	76	0	59	18	44	3	34	1.66
309367--309403	15	2.3	17	90	9	60	40	18	27	13	1.88
311154--311188	15	2.3	15	90	9	54	34	34	11	20	1.88
313589--313625	15	2.3	17	90	9	60	40	18	27	13	1.88
315518--315592	38	2.0	37	82	5	89	49	1	1	48	1.18
320006--320574	249	2.3	242	84	9	698	40	18	11	28	1.86
321168--321603	233	1.9	231	83	4	565	46	14	17	21	1.83
329193--329240	23	2.0	24	84	11	64	43	6	0	50	1.27
342293--342337	21	2.1	21	87	0	63	31	28	24	15	1.96
344159--344203	23	2.0	23	86	0	63	20	26	26	26	1.99
347437--347481	21	2.1	21	87	0	63	31	28	24	15	1.96
352586--352630	21	2.1	21	87	0	63	31	28	24	15	1.96
354456--354500	23	2.0	23	86	0	63	20	26	26	26	1.99
360295--360686	186	2.1	186	95	0	705	42	3	8	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371708--371792	36	2.4	36	100	0	170	40	17	12	29	1.87
375818--375851	16	2.1	16	94	0	59	32	26	8	32	1.87
381873--381917	20	2.3	20	88	3	65	48	37	0	13	1.42
384286--384429	7	20.4	7	75	7	112	19	0	34	45	1.51
385986--386046	31	2.0	31	86	0	86	22	11	19	45	1.82
388704--388859	42	3.8	41	78	10	129	26	21	19	32	1.97
389843--389895	25	2.1	25	100	0	106	43	3	7	45	1.50
393017--393118	42	2.5	41	84	6	118	30	24	11	33	1.91
393020--393149	40	3.2	40	83	6	138	29	25	11	33	1.91
393061--393231	60	2.8	60	80	3	157	27	23	13	35	1.92
393081--393209	40	3.2	40	81	4	127	27	22	14	34	1.93
392994--393231	20	11.9	20	69	10	112	30	23	13	33	1.92
399326--399377	21	2.5	21	81	3	61	38	19	25	17	1.93
399366--399500	20	6.7	20	80	7	130	33	23	17	25	1.96
399363--399494	61	2.2	61	88	0	192	35	23	16	24	1.95
399668--399711	22	2.0	22	95	0	79	20	45	15	18	1.85
399974--400032	20	3.0	20	87	0	73	16	18	22	42	1.89
400169--400223	25	2.2	24	78	15	58	20	9	18	52	1.71
401352--401396	18	2.5	18	88	0	72	26	44	15	13	1.83
401878--401923	20	2.3	20	85	7	58	36	26	19	17	1.94
401889--401944	20	2.8	20	81	2	69	39	21	21	17	1.93
401933--401969	14	2.8	13	91	4	56	48	27	16	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401934--401974	13	3.1	13	89	3	55	43	26	19	9	1.82
402012--402067	20	2.8	19	86	7	76	16	25	23	35	1.94
402433--402520	41	2.1	41	87	2	131	22	43	13	20	1.87
403936--403971	14	2.6	14	90	0	54	30	0	22	47	1.52
404175--404250	20	3.8	20	72	6	73	17	19	21	42	1.90
404163--404266	40	2.9	34	76	15	109	15	22	22	40	1.91
404464--404554	20	4.5	20	73	2	74	20	17	21	39	1.92
404540--404591	20	2.5	21	87	3	70	21	21	17	40	1.91
404788--404821	12	2.9	12	86	4	52	17	41	5	35	1.74
405376--405429	24	2.2	24	90	0	81	22	16	20	40	1.91
405604--405628	12	2.1	12	100	0	50	72	0	28	0	0.86
407919--408049	19	7.7	19	66	23	94	42	19	22	14	1.88
407919--408045	33	3.8	33	88	4	202	42	19	22	14	1.88
407920--408052	66	2.0	66	97	0	248	41	19	22	16	1.90
408074--408134	19	3.5	19	68	21	60	13	22	19	44	1.85
408045--408134	33	2.7	33	89	0	135	14	21	20	44	1.86
408241--408277	14	2.6	14	91	0	65	45	24	0	29	1.53
409654--409769	21	5.5	21	66	8	56	23	21	31	23	1.98
409634--409839	42	4.9	41	73	10	166	23	17	35	22	1.95
409664--409839	84	2.1	84	95	0	316	24	17	36	22	1.94
410059--410241	93	2.0	89	91	4	294	47	18	12	21	1.81
411953--412051	33	3.0	33	90	1	153	39	22	26	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412023--412073	19	2.7	19	96	0	93	45	21	21	11	1.84
412069--412115	19	2.5	19	85	0	58	10	12	23	53	1.70
413775--413829	27	2.0	27	89	6	85	23	27	18	30	1.97
413909--413960	27	1.9	27	84	0	68	32	13	25	28	1.93
414005--414080	27	2.8	27	94	4	127	27	18	27	26	1.98
414459--414512	19	2.8	20	74	23	53	11	3	7	77	1.09
414618--414649	15	2.0	17	88	11	50	46	6	15	31	1.71
416128--416180	22	2.5	21	84	3	70	26	0	1	71	0.96
420166--420207	12	3.5	12	90	0	66	40	4	0	54	1.21
425145--425185	14	3.0	14	85	7	57	36	4	0	58	1.20
425731--425784	22	2.5	22	100	0	108	16	44	24	14	1.85
431609--431662	20	2.7	20	91	0	90	22	24	22	31	1.98
431650--431722	21	3.5	21	96	0	128	24	35	26	13	1.93
431992--432061	34	2.1	32	89	5	104	21	31	15	31	1.95
432344--432385	21	2.0	21	95	0	75	26	28	21	23	1.99
432491--432540	19	2.7	18	87	9	73	32	14	14	40	1.85
432491--432557	19	3.6	18	84	8	71	34	13	11	40	1.81
432622--432712	31	3.0	31	95	3	159	42	16	6	34	1.74
437196--437243	20	2.4	20	89	0	69	41	14	16	27	1.87
438538--438580	18	2.4	18	96	0	77	25	30	4	39	1.76
443784--443865	21	3.9	21	78	7	76	25	36	23	14	1.93
450605--450695	6	15.2	6	83	4	69	36	8	12	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465682--465887	109	1.9	108	90	1	331	29	8	14	47	1.74
476724--476763	21	1.9	21	94	0	71	25	37	25	12	1.91
479951--479982	16	2.0	16	100	0	64	25	12	31	31	1.92
480912--480976	29	2.6	23	71	26	60	32	10	3	53	1.51
486194--486245	20	2.6	20	96	0	95	38	26	13	21	1.90
486235--486333	21	4.8	20	72	6	72	36	23	19	21	1.95
486300--486493	20	9.6	20	81	5	221	35	25	19	19	1.95
486300--486493	60	3.2	60	83	0	253	35	25	19	19	1.95
486873--486943	33	2.2	33	92	0	115	11	22	18	47	1.80
487064--487118	14	3.6	14	73	21	56	40	23	27	9	1.85

Tables:   1   2   3