genome.fa.s8073.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008073.1 Hibiscus syriacus cultivar Beakdansim tig00110575_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  510636

Tables:   1   2   3   

This is table  3  of  3  ( 268 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487064--487134	33	2.2	33	92	0	115	42	25	23	8	1.82
487130--487227	19	5.7	19	70	22	81	10	24	22	42	1.84
487152--487241	14	5.7	14	74	23	81	8	25	23	42	1.83
487135--487249	33	3.5	33	95	0	212	9	24	20	45	1.81
488947--489328	185	2.1	186	98	0	748	22	12	18	46	1.83
488947--489326	93	4.1	93	98	0	744	22	12	18	46	1.83
489370--489498	19	7.3	19	75	17	125	45	28	17	8	1.77
489406--489498	33	2.8	32	91	4	150	46	27	18	7	1.76
489370--489498	52	2.5	52	74	14	140	45	28	17	8	1.77
489494--489628	19	7.6	19	76	16	137	10	19	24	45	1.81
489516--489572	14	3.7	14	77	20	60	8	21	24	45	1.80
489499--489591	33	2.8	33	98	0	177	9	20	22	47	1.79
491445--491517	38	1.9	38	97	0	137	28	1	16	53	1.51
491440--491504	19	3.4	19	64	8	51	24	1	15	58	1.46
491499--491534	14	2.6	14	95	0	63	33	0	22	44	1.53
491641--491742	19	5.6	19	84	13	151	44	17	23	14	1.86
491771--492167	19	22.4	19	81	15	512	14	20	17	47	1.82
491749--492167	52	7.9	49	83	10	361	14	21	17	47	1.83
491771--492167	71	5.6	71	85	10	527	14	20	17	47	1.82
494470--494494	12	2.1	12	100	0	50	0	28	0	72	0.86
494669--494715	24	2.0	24	87	8	69	38	21	14	25	1.92
495389--495797	20	20.5	20	85	5	486	20	18	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496251--496309	30	2.0	29	96	3	109	33	28	10	27	1.89
498167--498318	67	2.2	70	91	3	247	34	7	18	38	1.80
498177--498282	37	3.1	37	61	27	86	34	6	16	42	1.74
501373--501417	23	1.9	24	86	4	65	40	11	22	26	1.87
501830--501871	23	1.9	21	85	9	57	26	2	2	69	1.13
502091--502141	26	2.0	26	92	0	84	35	3	9	50	1.54

Tables:   1   2   3

The End!