genome.fa.s8077.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008077.1 Hibiscus syriacus cultivar Beakdansim tig00110579_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  593651

Tables:   1   2   3   4   

This is table  1  of  4  ( 372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409--535	63	2.0	61	96	3	236	25	19	18	36	1.94
1564--1753	67	2.9	67	92	6	307	31	32	3	33	1.74
10569--10616	24	2.0	24	83	0	60	41	2	6	50	1.39
10845--10906	30	2.2	28	86	13	85	43	19	19	17	1.88
15282--16125	105	8.0	105	97	0	1553	23	17	25	33	1.96
28088--28213	63	2.0	63	90	0	198	35	17	22	24	1.95
29506--29576	33	2.1	34	84	5	90	15	8	5	70	1.31
31116--31189	21	3.6	21	78	10	89	37	25	16	20	1.93
31334--31406	22	3.3	22	90	0	110	21	42	15	20	1.89
31797--31839	20	2.2	20	100	0	86	13	13	25	46	1.81
31797--31867	20	3.5	20	84	0	70	14	14	21	50	1.77
33851--33887	19	1.9	19	100	0	74	5	16	29	48	1.68
33892--33938	20	2.3	20	81	0	58	19	19	25	36	1.95
33925--33967	19	2.2	20	91	4	70	13	13	23	48	1.79
34427--34504	21	3.7	21	74	5	68	23	32	19	25	1.98
37238--37292	3	18.3	3	85	7	67	58	0	0	41	0.98
37212--37296	12	7.3	12	76	12	72	50	0	0	49	1.00
37433--37791	124	3.0	117	81	7	457	25	18	14	40	1.89
37687--37875	84	2.3	78	82	8	220	27	19	15	37	1.92
37769--38970	237	5.1	237	98	0	2316	26	20	15	36	1.93
38915--38959	23	1.9	23	82	13	56	15	26	6	51	1.68
38779--38992	113	1.9	113	91	1	349	28	21	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39807--40176	93	4.1	92	90	6	535	35	21	13	29	1.92
41535--41560	13	2.0	13	100	0	52	0	23	0	76	0.78
48844--48875	15	2.1	15	94	0	55	46	9	18	25	1.79
54319--54373	3	18.3	3	85	7	76	60	0	0	40	0.97
55017--55078	14	4.3	14	77	6	61	38	0	14	46	1.45
55052--55165	36	3.4	36	68	22	111	26	3	15	54	1.57
55031--55188	63	2.4	65	90	6	248	29	2	17	51	1.58
55240--55317	20	3.9	20	82	0	93	44	24	16	14	1.84
55307--55486	20	9.6	20	76	14	179	24	20	22	33	1.97
55307--55486	34	4.8	40	76	15	179	24	20	22	33	1.97
55307--55486	94	1.9	93	88	3	272	24	20	22	33	1.97
55358--55486	54	2.3	56	86	8	172	25	19	21	33	1.97
55457--55739	140	2.0	140	100	0	566	43	15	13	27	1.84
55797--55831	18	1.9	18	94	0	61	17	2	25	54	1.57
57867--57893	14	1.9	14	100	0	54	7	18	29	44	1.77
57868--57900	14	2.5	13	90	9	50	6	21	24	48	1.72
58092--58145	24	2.2	24	90	0	81	40	18	18	22	1.91
58963--59072	20	5.4	20	75	10	107	23	20	26	30	1.98
58944--59072	41	3.2	39	82	9	152	24	18	25	31	1.98
58966--59072	40	2.6	41	88	4	146	24	19	25	30	1.98
61021--61083	23	2.7	23	82	0	81	52	12	20	14	1.74
63305--63349	17	2.6	17	86	10	58	68	2	0	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63312--63351	6	7.0	6	86	13	50	70	0	0	30	0.88
63727--63894	25	6.8	25	95	2	288	35	23	20	20	1.96
63727--63894	74	2.3	74	93	3	286	35	23	20	20	1.96
64792--64886	22	4.2	23	85	6	124	32	20	27	20	1.97
64902--64946	22	2.0	22	83	8	56	51	17	4	26	1.65
64975--65013	20	2.0	20	84	0	51	38	17	17	25	1.92
71532--71581	23	2.2	23	85	0	64	32	24	26	18	1.97
71540--71599	23	2.6	23	89	0	84	28	25	26	20	1.99
79713--80103	195	2.0	193	97	2	748	33	11	18	36	1.88
81157--81218	23	2.7	23	92	2	99	22	32	25	19	1.97
81157--81239	23	3.8	22	84	6	96	21	31	27	19	1.97
81601--81631	10	3.1	10	95	0	53	41	3	9	45	1.53
82811--82848	18	2.1	18	100	0	76	39	31	23	5	1.77
98311--98340	14	2.1	14	100	0	60	30	20	13	36	1.90
116170--116251	42	2.0	42	97	0	155	12	39	14	34	1.84
117717--117931	104	2.1	104	100	0	430	32	18	17	31	1.94
121523--121607	42	2.0	42	97	0	161	11	42	12	32	1.80
124150--124242	21	4.5	21	78	2	89	23	15	26	34	1.94
124125--124242	62	1.9	62	92	0	200	21	17	25	35	1.95
124415--124480	21	3.1	21	95	0	123	27	28	16	27	1.97
124905--124955	6	8.5	6	97	0	93	0	15	52	31	1.43
125056--125149	22	4.4	22	78	8	122	38	25	18	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125138--125235	21	4.7	21	82	2	135	32	26	17	23	1.96
127065--127130	32	2.1	32	100	0	132	36	18	10	34	1.85
129473--129575	3	34.7	3	86	1	145	66	0	0	32	0.98
129730--130462	119	6.2	118	94	1	1254	27	20	14	36	1.92
129727--130491	237	3.2	235	93	2	1282	28	20	15	36	1.93
131133--131690	52	10.7	52	97	0	1028	37	23	15	24	1.93
132841--132877	13	3.0	12	88	7	56	0	13	0	86	0.57
132841--132873	15	2.3	15	94	5	59	0	12	0	87	0.53
152545--152637	29	3.1	29	73	11	107	35	18	5	40	1.73
152500--152688	60	3.2	60	89	0	270	34	19	4	41	1.71
152573--152679	31	3.5	31	70	14	105	36	21	4	37	1.74
152555--152647	29	3.1	29	70	17	91	37	19	4	38	1.71
155245--155285	19	2.1	20	86	13	59	34	7	4	53	1.50
165023--165083	19	3.2	19	77	9	70	52	1	3	42	1.27
166067--166096	11	2.6	12	89	10	53	33	16	0	50	1.46
166071--166098	11	2.5	11	100	0	56	32	17	0	50	1.47
167220--167264	24	2.0	22	83	16	56	26	15	15	42	1.87
168354--168584	77	2.8	82	81	10	294	53	7	8	30	1.58
168354--168600	79	3.1	78	83	7	257	52	7	7	31	1.58
171308--171359	3	16.7	3	92	7	86	65	1	0	32	1.04
171484--171913	111	3.9	111	90	1	630	26	16	24	32	1.96
171490--171913	222	1.9	224	91	2	694	27	16	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178730--178799	32	2.2	32	89	2	115	30	11	18	40	1.86
189248--189314	23	2.9	23	95	0	116	17	28	26	26	1.98
189398--189466	26	2.7	26	97	0	129	20	17	28	33	1.95
190261--190301	22	1.9	21	85	5	55	19	24	31	24	1.98
191251--191299	26	2.0	26	84	8	66	44	0	2	53	1.12
203085--203125	8	5.2	8	82	5	57	34	0	29	36	1.58
203087--203132	23	2.0	24	91	4	76	32	0	28	39	1.57
203196--203623	128	3.4	128	96	0	790	22	24	19	32	1.97
204484--204537	20	2.7	20	77	13	65	59	1	1	37	1.19
208420--208460	8	5.2	8	82	5	57	34	0	29	36	1.58
208422--208467	23	2.0	24	91	4	76	32	0	28	39	1.57
208531--209156	128	4.9	128	94	1	1064	22	23	19	33	1.97
209557--209657	34	3.0	34	86	0	148	38	3	3	53	1.38
210180--210270	21	4.3	20	82	9	101	21	26	34	17	1.96
210177--210268	42	2.2	42	86	3	123	23	27	31	17	1.97
210274--210321	21	2.3	21	85	0	60	22	12	39	25	1.89
212045--212133	34	2.7	31	81	6	97	59	2	0	38	1.10
212048--212122	31	2.4	33	77	11	84	60	1	0	38	1.06
214114--214187	2	37.0	2	100	0	148	50	0	0	50	1.00
225725--225790	27	2.4	27	100	0	132	18	13	22	45	1.84
234059--234093	15	2.3	15	100	0	70	14	34	25	25	1.94
239779--239831	20	2.7	20	90	0	79	39	20	18	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239818--239904	20	4.3	20	91	0	129	31	26	18	24	1.98
240746--240799	24	2.2	24	86	0	72	20	18	20	40	1.91
243211--243284	20	3.7	21	87	7	109	35	25	20	18	1.96
243328--243392	20	3.2	20	100	0	130	9	15	20	55	1.67
243380--243445	33	2.0	34	93	3	116	13	22	15	48	1.80
243388--243457	33	2.1	33	89	0	104	14	22	17	45	1.84
243574--243610	14	2.6	14	86	0	56	48	21	0	29	1.50
244994--245095	21	4.9	20	72	7	69	23	19	34	22	1.97
245594--245685	20	4.6	20	93	0	148	34	19	18	27	1.95
245619--245704	40	2.3	36	84	15	106	32	20	22	24	1.98

Tables:   1   2   3   4