Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008077.1 Hibiscus syriacus cultivar Beakdansim tig00110579_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  593651

Tables:   1   2   3   4   

This is table  4  of  4  ( 372 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
547779--547857
12
6.8
12
84
5
108
20
18
27
32
1.96
547767--547857
23
3.9
23
91
1
137
20
19
28
30
1.97
547780--547857
35
2.2
36
84
8
63
19
19
28
33
1.96
550435--550497
11
5.9
11
73
14
60
39
1
1
57
1.18
550562--550588
12
2.2
12
100
0
54
33
14
25
25
1.95
578107--578135
12
2.3
13
94
5
51
27
3
6
62
1.37
581426--581512
35
2.5
34
80
12
97
55
10
8
26
1.61
583839--583876
10
3.8
10
96
0
67
39
0
31
28
1.57
585675--585723
24
2.0
24
96
0
89
38
8
10
42
1.68
589430--589498
24
2.9
24
82
4
68
52
2
10
34
1.50
589546--589573
2
14.0
2
100
0
56
50
0
0
50
1.00
592762--592918
77
2.0
78
97
1
298
26
10
28
35
1.90

Tables:   1   2   3   4

The End!