genome.fa.s8077.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008077.1 Hibiscus syriacus cultivar Beakdansim tig00110579_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  593651

Tables:   1   2   3   4   

This is table  2  of  4  ( 372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246417--246731	149	2.1	149	96	0	576	34	20	16	27	1.94
248951--249017	20	3.3	20	91	0	80	20	17	22	38	1.93
248941--249084	33	4.1	34	74	11	137	16	19	21	42	1.89
250968--251057	20	4.6	20	85	1	101	45	23	16	14	1.84
251386--251451	22	3.0	22	88	0	96	22	15	37	24	1.92
251631--251741	20	5.6	20	82	4	127	20	16	20	42	1.89
251738--251783	21	2.2	21	92	0	74	39	17	26	17	1.91
253751--253827	32	2.4	32	79	10	88	45	12	23	18	1.84
262020--262066	20	2.4	19	89	10	76	55	10	17	17	1.69
261807--262281	182	2.6	183	90	1	711	43	13	16	26	1.85
264468--264532	21	3.1	21	93	0	103	41	10	30	16	1.83
264566--264631	33	2.0	33	90	0	105	28	0	48	22	1.51
266424--266470	19	2.5	19	86	3	69	29	2	8	59	1.39
266589--268766	200	10.9	199	97	0	4122	36	14	17	31	1.90
266589--268764	399	5.4	400	98	0	4151	36	14	17	31	1.90
270213--270306	12	7.8	12	86	0	98	37	7	32	22	1.82
270230--270310	3	27.0	3	79	0	90	35	6	33	24	1.81
270213--270294	36	2.3	36	91	0	128	37	8	32	20	1.83
272280--272772	183	2.7	183	96	0	898	34	15	17	32	1.92
275622--275681	23	2.6	23	86	0	75	36	5	20	38	1.74
283251--283584	167	2.0	167	98	0	641	41	12	7	38	1.72
288185--288225	22	1.9	22	95	5	75	36	0	2	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300072--300211	62	2.3	62	92	0	244	35	11	35	17	1.85
302116--302141	5	5.2	5	100	0	52	0	38	0	61	0.96
309962--310022	2	32.5	2	76	18	51	44	0	1	54	1.10
311391--311436	20	2.3	20	78	14	51	45	4	0	50	1.21
312929--313143	20	10.6	20	75	8	121	39	20	22	17	1.92
313228--313301	6	12.5	6	98	1	141	32	51	16	0	1.45
313988--314056	6	11.7	6	98	1	131	0	17	50	31	1.46
314165--314495	20	16.4	20	92	3	547	24	24	15	35	1.94
314506--314581	21	3.5	21	72	13	82	17	23	28	30	1.97
314483--314588	44	2.4	44	98	0	203	16	22	23	36	1.94
314574--314627	20	2.7	20	94	0	90	11	18	18	51	1.74
314614--314664	19	2.6	20	90	3	77	15	17	23	43	1.88
316107--316156	19	2.8	18	76	8	50	54	0	0	46	1.00
316187--316249	27	2.2	28	83	10	76	47	0	3	49	1.17
316254--316298	23	2.0	23	86	0	63	53	2	2	42	1.25
317658--317704	18	2.6	18	100	0	94	25	14	36	23	1.93
318726--319131	14	31.0	14	67	23	181	40	3	5	50	1.44
318718--318888	37	4.6	37	93	2	242	40	4	5	50	1.44
318742--318815	23	3.3	21	81	11	58	40	2	5	51	1.39
318721--319105	8	51.5	8	66	21	104	40	3	5	50	1.42
318779--319063	23	12.3	23	73	13	183	40	3	5	50	1.43
318763--319116	37	9.7	37	84	12	387	40	3	5	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318728--319116	96	3.8	98	86	9	485	40	3	5	50	1.42
318779--319058	31	8.5	31	76	20	268	40	3	5	50	1.44
318802--319116	107	2.9	104	85	7	398	40	3	5	50	1.41
318802--319091	68	4.2	68	88	6	390	40	3	5	50	1.41
318726--319026	37	7.4	42	76	16	144	40	3	5	49	1.46
319605--319635	6	5.2	6	92	0	53	19	61	0	19	1.35
319605--319640	18	2.0	18	94	0	63	16	58	2	22	1.51
321375--321733	172	2.1	173	90	1	560	37	18	5	39	1.72
322195--322238	23	1.9	23	100	0	88	25	40	25	9	1.84
322268--322314	22	2.1	22	96	0	85	12	36	21	29	1.91
324071--324117	21	2.2	21	100	0	94	42	19	29	8	1.80
326655--326695	8	5.2	8	82	5	57	34	0	29	36	1.58
326766--327261	128	3.9	128	95	1	885	23	24	19	32	1.97
327662--327762	34	3.0	34	86	0	148	38	3	3	53	1.38
328285--328375	21	4.3	20	83	6	101	20	25	34	19	1.97
328379--328426	21	2.3	21	85	0	60	22	12	39	25	1.89
330146--330234	34	2.7	31	81	6	97	59	2	0	38	1.10
330149--330223	31	2.4	33	77	11	84	60	1	0	38	1.06
342452--342503	21	2.5	21	83	0	59	21	23	19	36	1.95
342495--342564	20	3.5	20	72	3	68	38	18	21	21	1.93
343082--343115	17	2.1	16	88	5	50	76	0	8	14	1.01
353277--353310	17	2.1	16	88	5	50	76	0	8	14	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354658--354719	22	2.8	22	92	0	106	27	33	12	25	1.93
355056--355165	20	5.6	20	87	1	132	14	16	21	47	1.82
357042--357093	20	2.6	20	93	0	86	38	23	19	19	1.93
357138--357224	20	4.3	20	85	5	95	21	17	21	39	1.93
357138--357224	40	2.2	40	85	0	111	21	17	21	39	1.93
357152--357234	20	4.2	20	87	0	76	18	16	21	43	1.88
357710--357751	21	2.2	19	87	12	59	21	35	19	23	1.96
357734--357813	42	1.9	42	82	5	99	20	35	21	23	1.96
359197--359232	14	2.6	14	90	0	54	30	0	22	47	1.52
359338--359433	33	2.8	33	85	3	129	42	19	22	14	1.88
359444--359510	20	3.7	19	73	20	72	13	22	19	44	1.85
359448--359543	33	2.9	34	88	3	140	13	23	20	41	1.88
359515--359603	20	4.4	20	91	2	144	16	22	25	34	1.95
362917--362964	20	2.4	20	96	0	87	20	18	25	35	1.95
362927--363066	20	6.9	20	82	8	124	20	20	22	37	1.94
378001--378061	23	2.7	23	92	2	97	18	26	32	22	1.97
387314--387464	2	78.5	2	67	21	74	47	2	3	46	1.33
387322--387399	19	4.7	17	71	16	65	48	2	1	47	1.23
387319--387471	13	11.2	13	75	12	96	47	3	3	45	1.35
387636--387722	20	4.5	18	92	7	120	41	0	31	27	1.56
387665--387720	12	5.3	12	69	30	56	41	0	32	26	1.56
387646--387721	20	3.8	20	94	5	129	40	0	31	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387921--388003	4	20.8	4	97	0	157	26	0	24	49	1.51
388036--388118	2	43.5	2	75	17	79	49	0	6	44	1.27
388167--388240	7	10.6	7	69	11	53	41	33	4	20	1.71
388280--388358	15	5.4	15	76	13	67	46	8	2	41	1.48
388280--388358	19	4.1	19	76	14	81	46	8	2	41	1.48
388296--388349	23	2.3	23	96	0	99	46	9	0	44	1.35
388280--388349	2	34.0	2	76	11	61	47	8	1	42	1.43
388434--388491	7	8.3	7	82	0	71	50	32	0	17	1.46
388317--389497	533	2.2	527	88	6	1772	43	11	8	36	1.71
389501--389563	21	3.0	20	79	9	72	52	26	0	20	1.47
389502--389567	7	9.4	7	83	6	55	54	24	0	21	1.45
391827--391901	38	2.0	37	85	10	100	49	4	0	46	1.20
394057--394102	21	2.1	21	88	8	65	30	0	0	69	0.89
396856--396985	20	6.4	20	86	4	163	44	23	10	20	1.83
396856--397004	20	7.4	21	84	5	139	43	22	10	22	1.84
397933--397979	24	2.0	24	95	0	85	27	21	17	34	1.95
400256--400291	18	2.0	18	88	0	54	55	22	2	19	1.56
400545--400590	20	2.3	20	85	7	58	45	21	19	13	1.84
400602--400655	20	2.7	20	79	0	72	24	18	18	38	1.93
400618--400751	54	2.5	54	90	0	205	29	20	20	29	1.98
402308--402354	21	2.2	21	88	0	67	12	23	40	23	1.89
402328--402404	21	3.7	20	78	14	84	19	22	36	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404496--404603	20	5.3	20	84	1	126	50	18	16	14	1.79
404496--404614	40	2.9	40	79	2	139	49	18	15	15	1.80
404496--404610	60	1.9	60	87	3	169	50	18	15	15	1.78
404614--404684	20	3.5	20	84	1	79	15	16	18	49	1.80
404995--405037	22	2.0	22	90	0	68	23	11	39	25	1.88
405194--405259	20	3.3	20	91	0	105	18	12	24	45	1.83
405253--405295	20	2.3	19	92	8	70	18	16	23	41	1.89
413537--413586	26	1.9	26	88	8	75	66	4	12	18	1.39
418360--418396	18	2.1	18	89	0	56	21	32	35	10	1.88
419224--419273	26	1.9	26	88	8	75	66	6	10	18	1.42

Tables:   1   2   3   4