genome.fa.s8106.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008106.1 Hibiscus syriacus cultivar Beakdansim tig00110641_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  540947

Tables:   1   2   3   

This is table  2  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205149--205202	24	2.2	24	93	0	90	27	29	11	31	1.91
205405--205452	3	16.0	3	83	16	64	31	0	2	66	1.03
206974--207010	17	2.2	16	90	4	56	40	2	0	56	1.13
208766--208822	28	2.0	28	100	0	114	33	14	17	35	1.90
227051--227180	47	2.7	49	80	8	135	29	20	6	43	1.78
231202--231243	20	2.1	20	95	0	75	4	16	4	73	1.17
231196--231249	26	2.1	25	86	10	74	5	16	3	74	1.16
231189--231284	6	15.3	6	73	17	54	4	18	3	73	1.12
232378--232402	6	4.2	6	100	0	50	32	36	16	16	1.90
235662--235692	7	4.4	7	100	0	62	25	29	29	16	1.96
235682--235724	22	2.0	22	100	0	86	9	23	48	18	1.76
235721--235838	9	12.3	9	80	10	110	28	27	27	16	1.97
235727--235839	19	5.8	19	85	7	122	29	27	26	16	1.97
235746--235838	29	3.2	28	80	10	89	30	26	26	16	1.96
235727--235839	48	2.3	49	90	4	176	29	27	26	16	1.97
242993--243023	7	4.4	7	100	0	62	25	29	29	16	1.96
243013--243055	22	2.0	22	95	0	77	11	23	46	18	1.82
243058--243151	19	4.8	19	82	8	109	29	26	25	18	1.98
243052--243150	9	10.3	9	80	10	90	29	26	27	17	1.97
243053--243150	29	3.4	28	84	5	115	29	26	26	17	1.97
249807--250212	225	1.8	224	82	5	523	31	21	16	30	1.96
250747--250874	26	5.0	25	74	16	102	45	2	4	47	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250806--250874	29	2.5	29	86	6	90	43	2	4	49	1.37
250880--250907	3	9.3	3	100	0	56	32	0	0	67	0.91
253070--253243	61	2.9	62	84	5	230	33	12	23	29	1.92
258568--258598	10	3.1	10	90	0	53	32	29	0	38	1.57
261448--261585	42	3.1	42	64	17	107	44	5	15	34	1.68
261418--261600	91	2.0	91	98	0	357	43	4	16	34	1.69
261766--261812	22	2.1	22	96	0	85	38	4	10	46	1.58
269727--269785	20	2.8	21	80	12	59	37	16	18	27	1.93
273161--273232	31	2.5	28	73	15	74	47	5	11	36	1.63
295797--296092	150	2.0	151	94	4	530	27	20	16	35	1.94
296504--296532	3	9.7	3	100	0	58	0	34	0	65	0.93
296602--296652	18	2.8	18	93	0	84	37	25	9	27	1.87
298208--298294	43	2.0	43	100	0	174	57	13	16	12	1.65
311597--311621	1	25.0	1	100	0	50	0	0	0	100	0.00
319832--319905	24	3.0	24	71	9	69	21	10	4	63	1.43
319958--320018	25	2.5	26	81	7	74	22	8	1	67	1.27
320016--320051	14	2.6	14	91	8	56	25	11	2	61	1.43
322266--322302	14	2.8	14	88	8	51	16	16	8	59	1.59
322257--322306	6	8.0	6	80	8	55	18	16	10	56	1.67
322257--322314	20	3.0	20	87	5	75	18	15	10	55	1.68
324298--324336	14	3.0	13	85	10	53	84	0	15	0	0.62
327010--327094	20	4.2	20	73	11	82	29	15	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327030--327190	42	3.8	42	88	1	225	26	16	19	37	1.93
327096--327161	22	3.1	22	68	16	66	27	18	16	37	1.92
327315--327399	37	2.4	34	78	5	89	34	20	7	38	1.79
327559--328486	123	7.6	123	88	2	1366	40	15	19	25	1.90
327559--329179	246	6.4	246	78	11	1396	39	15	18	25	1.90
327562--328486	366	2.5	363	90	2	1381	40	15	18	25	1.90
328399--328901	138	3.6	138	85	2	645	38	16	18	26	1.91
330705--330766	25	2.5	26	86	5	92	24	6	3	66	1.30
330705--330762	26	2.3	25	90	3	89	24	6	3	65	1.33
330764--330799	14	2.6	14	91	8	56	25	11	2	61	1.43
335585--335652	24	2.8	24	93	0	109	22	16	23	38	1.93
336854--336948	42	2.3	42	100	0	190	15	24	5	54	1.62
339498--339528	10	3.0	10	95	4	53	77	0	0	22	0.77
339501--339555	28	1.9	29	85	3	76	72	0	7	20	1.07
339499--339570	34	2.1	35	82	7	85	70	0	6	22	1.10
340732--340833	37	2.7	34	80	15	96	54	4	0	39	1.28
340725--340833	18	5.7	19	71	20	77	55	4	0	39	1.27
340730--340810	28	3.0	27	78	10	85	56	4	0	38	1.21
340818--340889	26	2.7	26	84	6	81	47	4	1	47	1.30
340899--341009	22	5.1	20	74	19	73	43	9	3	44	1.53
342014--342040	4	6.8	4	100	0	54	77	0	0	22	0.76
343930--343972	15	2.9	15	80	16	54	20	2	4	72	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343933--343972	14	2.8	13	82	17	53	20	2	5	72	1.15
347762--347859	8	12.1	7	73	19	52	75	2	20	2	1.00
347763--347864	12	7.6	13	68	23	61	75	1	20	1	1.00
347754--347830	9	8.6	9	79	11	59	79	2	14	3	0.99
347754--347830	17	4.3	18	80	13	79	79	2	14	3	0.99
347792--347850	17	3.4	17	80	2	64	74	3	20	1	1.05
348170--348203	13	2.5	13	90	4	50	32	2	2	61	1.26
349812--350032	113	2.0	113	90	3	347	31	12	23	32	1.92
349958--350103	71	2.1	71	96	0	265	32	11	23	32	1.90
350398--350518	42	2.9	41	80	1	116	26	20	22	30	1.98
352090--352128	13	2.9	14	84	7	53	28	0	0	71	0.86
352126--352254	51	2.6	50	89	7	190	20	10	13	56	1.65
356437--356490	21	2.5	21	90	3	81	20	20	35	24	1.96
356536--356579	22	2.0	21	91	4	70	11	25	43	20	1.85
359138--359195	23	2.6	23	88	2	82	20	25	29	24	1.99
360646--360747	51	2.0	51	96	0	186	31	28	16	23	1.96
362366--362509	49	2.9	49	88	1	207	27	18	15	39	1.90
391344--391571	112	2.0	111	93	0	384	35	20	16	28	1.94
393231--394018	101	7.9	100	76	7	654	39	13	10	36	1.79
393231--393939	200	3.6	196	79	8	684	39	13	10	36	1.79
394308--394858	201	2.8	191	82	6	635	39	13	8	37	1.77
394221--394875	100	6.6	100	80	8	612	39	14	8	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394578--394755	89	2.0	89	92	3	295	37	14	10	38	1.79
394667--394875	103	2.0	101	87	5	296	41	15	8	34	1.77
394496--394852	192	1.9	188	86	5	504	39	14	8	37	1.77
395592--395969	144	2.6	142	85	4	474	42	12	13	31	1.81
399638--399668	2	15.5	2	100	0	62	51	0	0	48	1.00
401663--401775	57	2.0	57	92	0	190	27	26	17	28	1.98
405842--406048	103	2.0	103	100	0	414	36	10	17	35	1.84
406484--406750	130	2.1	130	99	0	525	38	4	13	43	1.65
406521--406791	130	2.1	130	85	5	352	39	6	12	41	1.69
407887--407930	16	2.6	16	82	7	52	45	0	4	50	1.22
418885--418924	17	2.4	17	83	8	55	40	2	0	57	1.12
419756--419789	2	17.0	2	100	0	68	50	0	0	50	1.00
420085--420157	33	2.2	33	95	0	128	34	30	17	17	1.94
426812--427142	164	2.0	164	98	1	646	26	17	21	35	1.95
448062--448148	35	2.5	34	78	12	88	56	10	6	26	1.58
448365--448399	18	1.9	18	88	0	52	11	31	17	40	1.85
450653--450808	51	3.1	50	77	6	147	26	28	28	16	1.97
451955--452036	35	2.4	34	87	2	110	50	4	13	31	1.63
453892--454001	56	2.0	56	94	1	195	25	19	13	41	1.88
454472--454545	29	2.6	29	86	0	112	16	32	29	21	1.95
454547--454606	21	2.9	21	63	9	50	10	38	18	33	1.84
454547--454656	42	2.6	42	94	0	184	14	35	16	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455146--455209	21	3.1	21	93	2	103	31	0	15	53	1.43
455186--455239	28	1.9	28	96	0	99	29	0	12	57	1.36
455633--455659	14	1.9	14	100	0	54	7	3	14	74	1.18
456012--456042	14	2.3	13	94	5	53	25	6	0	67	1.14
458949--459107	46	3.4	47	93	6	277	40	0	15	44	1.46
458890--459107	46	4.6	49	85	10	267	41	0	12	44	1.46
458890--459107	95	2.3	96	86	7	295	41	0	12	44	1.46
459109--459478	12	30.0	13	72	16	136	47	1	7	42	1.42
458912--459485	49	11.6	49	70	22	221	45	1	9	43	1.43
459142--459186	16	2.6	18	89	6	67	37	0	11	51	1.38

Tables:   1   2   3