Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008106.1 Hibiscus syriacus cultivar Beakdansim tig00110641_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  540947

Tables:   1   2   3   

This is table  3  of  3  ( 272 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
459176--459485
26
12.5
26
79
11
253
48
1
7
42
1.41
459281--459423
3
48.7
3
81
4
139
55
2
3
38
1.29
459079--459485
38
10.3
40
72
19
175
46
1
8
43
1.43
459114--459485
14
27.1
14
74
16
214
47
1
7
43
1.40
459603--459661
23
2.6
22
75
15
66
42
0
3
54
1.17
459615--459656
17
2.5
17
80
0
57
40
0
2
57
1.12
459572--459698
59
2.2
56
80
11
130
42
1
6
49
1.37
461976--462024
22
2.2
22
92
0
80
38
18
0
42
1.50
461968--462060
30
3.4
29
75
22
110
45
16
0
38
1.47
462269--462308
21
1.9
21
94
0
71
55
15
0
30
1.41
462406--462537
54
2.4
56
79
14
150
49
12
0
38
1.40
462522--462586
28
2.3
29
82
10
82
46
15
1
36
1.55
462640--462700
21
2.9
21
97
0
113
55
14
1
27
1.49
462699--462764
31
2.1
31
94
0
114
42
15
1
40
1.56
462781--462818
9
4.2
9
83
10
51
65
2
0
31
1.06
462998--463081
23
3.6
23
81
9
116
42
14
19
23
1.87
463235--463307
38
1.9
38
97
0
137
36
36
15
10
1.82
463291--463342
25
2.1
25
92
0
86
30
42
17
9
1.81
463337--463417
29
2.8
29
84
0
117
18
38
25
17
1.92
466612--466646
18
1.9
18
94
0
61
77
5
0
17
0.96
468128--468407
135
2.1
133
85
2
373
30
17
16
35
1.93
480199--480255
25
2.3
25
85
11
73
71
5
1
21
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
490211--490264
20
2.7
20
97
0
99
18
44
22
14
1.86
501378--501430
20
2.7
20
87
0
70
32
18
18
30
1.96
504160--504213
22
2.5
21
81
3
63
40
20
16
22
1.91
510030--510071
15
2.8
15
79
13
50
4
19
0
76
0.96
522680--522863
84
2.2
83
84
9
223
32
2
12
53
1.51
532118--532162
18
2.5
18
92
0
72
53
4
22
20
1.63
532563--532889
163
2.0
164
99
0
647
28
15
20
36
1.93
534154--534200
25
1.9
25
95
4
87
53
0
4
42
1.20
539983--540050
30
2.3
30
84
0
82
20
27
7
44
1.78
539997--540054
30
1.9
30
92
0
98
18
31
3
46
1.66

Tables:   1   2   3

The End!