genome.fa.s8113.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008113.1 Hibiscus syriacus cultivar Beakdansim tig00110652_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  992058

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 576 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4294--4362	21	3.3	20	79	4	75	23	18	36	21	1.95
4352--4408	21	2.7	21	91	5	89	26	21	28	24	1.99
4706--4785	21	3.8	21	94	0	142	38	28	12	20	1.89
4705--4843	21	6.6	21	74	14	63	35	32	12	20	1.89
4748--4869	63	1.9	63	80	6	140	33	33	12	20	1.90
4860--4905	21	2.2	21	84	0	56	34	30	8	26	1.86
6580--6618	19	2.0	20	95	5	71	46	25	15	12	1.81
6990--7033	22	2.1	21	91	8	72	22	13	40	22	1.89
7206--7250	20	2.2	20	96	0	81	20	11	24	44	1.83
7241--7290	20	2.5	20	80	0	64	24	16	22	38	1.93
7283--7326	21	2.1	21	86	0	70	38	15	25	20	1.92
12155--12196	21	2.0	22	85	4	59	30	7	0	61	1.22
12251--12275	11	2.3	11	100	0	50	40	0	0	60	0.97
19079--19136	3	19.0	3	96	3	107	65	0	0	34	0.93
27280--27338	23	2.6	23	83	0	73	47	10	25	16	1.78
30467--30525	23	2.6	23	91	0	91	27	27	27	18	1.98
37397--37447	23	2.2	23	85	0	66	31	27	21	19	1.97
38485--38536	18	2.9	17	83	8	68	21	44	19	15	1.87
38518--38542	13	1.9	13	100	0	50	16	40	24	20	1.91
38545--38659	59	2.0	58	86	5	160	33	6	20	40	1.79
38557--38678	28	4.3	27	72	10	100	33	6	19	40	1.78
45773--45813	21	2.0	21	90	0	64	17	19	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45774--45819	10	4.6	10	84	7	58	15	21	23	39	1.92
45856--46011	28	5.4	28	72	11	100	30	4	23	41	1.74
47870--47991	64	1.9	64	86	0	172	25	17	21	36	1.95
48878--48963	45	1.9	45	83	4	111	41	16	11	30	1.83
50070--50138	19	3.6	19	88	3	95	34	18	28	17	1.94
53740--53829	30	3.0	30	81	4	83	24	27	20	27	1.99
54716--54778	27	2.3	27	83	5	74	44	25	11	19	1.83
55856--55961	32	3.3	32	81	5	108	20	24	23	31	1.98
61000--61092	21	4.5	21	78	4	100	39	18	24	17	1.91
61000--61092	41	2.3	41	100	0	186	39	18	24	17	1.91
61078--61128	20	2.5	20	77	3	57	45	19	15	19	1.86
61123--61170	20	2.4	21	86	10	73	29	29	16	25	1.97
61078--61155	41	1.9	41	83	0	102	41	21	15	21	1.90
61688--61754	19	3.5	19	83	2	80	47	23	16	11	1.80
61750--61913	20	9.1	19	71	18	118	12	21	21	43	1.86
61755--61831	39	2.0	39	84	5	102	10	19	24	45	1.81
61803--61888	31	2.7	31	89	5	109	12	24	24	38	1.90
61793--61888	33	3.0	31	86	4	120	12	22	25	39	1.89
63961--64027	21	3.2	21	64	6	55	25	35	19	19	1.95
63905--64027	42	2.9	42	81	4	115	23	36	17	22	1.94
66822--66888	19	3.5	19	83	4	89	37	23	23	14	1.93
66861--66938	32	2.4	33	93	4	133	46	24	19	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66945--67040	19	5.6	17	72	21	78	11	19	22	45	1.82
66967--67024	14	3.9	14	79	16	71	8	17	25	48	1.75
66950--67040	32	2.8	33	94	3	166	10	18	23	47	1.80
67025--67079	20	2.8	19	83	8	65	16	23	23	36	1.94
67549--67593	18	2.5	18	85	0	63	15	15	42	26	1.87
69209--69252	22	2.0	22	95	0	79	18	15	45	20	1.85
69440--69533	20	4.7	20	80	2	89	23	18	24	34	1.96
69420--69534	20	5.7	20	78	5	88	23	17	23	35	1.95
69462--69596	41	3.3	41	80	4	121	20	20	20	38	1.94
69523--69612	21	4.4	20	76	4	90	18	22	17	41	1.91
69527--69618	41	2.2	41	92	0	148	20	19	17	42	1.89
70444--70558	59	1.9	59	100	0	230	33	16	5	44	1.70
85121--85220	42	2.4	42	100	0	200	8	21	17	54	1.68
85154--85224	23	3.3	23	62	22	62	9	19	15	54	1.68
90298--90350	20	2.6	21	76	8	65	28	28	15	28	1.96
90338--90390	20	2.6	21	69	6	54	28	22	24	24	2.00
90376--90426	19	2.6	19	81	3	66	41	23	15	19	1.90
91334--91387	24	2.2	24	93	6	92	20	14	20	44	1.86
91562--91592	3	10.3	3	92	0	53	64	0	32	3	1.09
93985--94118	20	7.0	20	75	11	102	20	20	20	38	1.93
94512--94566	24	2.3	25	81	9	69	32	5	14	47	1.67
94531--94567	18	2.1	18	89	0	56	32	5	10	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94523--94575	24	2.2	24	86	0	70	35	3	13	47	1.61
94877--94963	39	2.2	39	97	0	165	47	20	14	17	1.83
95146--95183	20	2.0	20	89	5	60	42	23	15	18	1.89
95370--95509	66	2.2	60	87	7	190	52	17	0	30	1.45
96883--96981	21	4.7	21	74	8	85	23	19	32	25	1.97
96863--96956	42	2.2	42	84	0	116	19	19	35	26	1.95
96883--96981	42	2.4	42	76	6	101	23	19	32	25	1.97
99642--99754	20	5.7	20	73	12	106	20	17	21	40	1.91
99642--99754	40	2.8	40	77	15	133	20	17	21	40	1.91
99650--99778	60	2.2	60	84	2	161	20	17	21	39	1.92
111662--111721	30	1.9	32	83	12	81	25	1	11	61	1.39
112009--112038	12	2.5	12	100	0	60	40	16	36	6	1.75
112420--112467	18	2.6	18	83	12	62	22	2	2	72	1.05
112504--114007	752	2.0	747	93	1	2566	33	19	14	32	1.92
116124--116176	5	10.8	5	80	11	56	18	7	0	73	1.06
116125--116175	14	3.5	14	81	5	57	19	7	0	72	1.08
117896--118015	64	1.9	64	91	3	197	31	0	15	53	1.42
118595--118643	19	2.6	18	78	15	55	20	6	2	71	1.18
118675--118734	15	3.7	15	78	17	50	26	1	0	71	0.95
118689--118735	22	2.2	20	85	7	58	23	0	0	76	0.78
118668--118737	18	3.6	18	71	22	52	27	1	0	71	0.94
124806--124872	31	2.2	31	88	0	98	32	10	26	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126339--126487	38	4.0	38	82	4	169	42	23	9	24	1.83
128644--128802	65	2.5	64	84	5	196	28	18	23	29	1.98
129281--129310	2	15.0	2	100	0	60	50	0	0	50	1.00
129467--129499	2	16.5	2	100	0	66	51	0	0	48	1.00
131475--131554	23	3.6	22	77	5	90	25	25	25	25	2.00
131479--131573	44	2.2	42	85	7	120	25	22	25	27	2.00
131475--131573	21	4.7	20	75	10	74	24	22	26	27	2.00
137263--137314	23	2.3	23	77	6	63	23	40	19	17	1.91
144484--144525	21	2.0	21	86	9	59	35	11	2	50	1.52
146448--146496	19	2.7	17	84	9	53	26	20	28	24	1.99
146468--146624	65	2.5	64	82	8	178	28	19	22	29	1.98
146577--146630	17	3.0	18	75	8	65	29	18	25	25	1.98
147352--147412	23	2.7	23	92	0	104	26	27	27	18	1.98
149992--150059	30	2.3	30	89	0	100	26	13	33	26	1.93
153968--154001	9	3.7	9	88	4	50	50	14	8	26	1.72
154007--154393	183	2.1	181	88	6	582	46	7	2	43	1.45
155272--155305	6	5.8	6	89	3	52	14	17	0	67	1.23
156951--157223	20	13.5	20	75	15	165	40	21	20	16	1.91
157032--157148	42	2.8	41	88	5	155	35	25	21	17	1.95
157028--157243	62	3.5	62	82	5	228	38	23	21	16	1.92
157032--157243	20	10.4	20	82	9	189	38	23	21	16	1.93
157354--157410	6	9.5	6	100	0	114	33	50	15	0	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158170--158238	6	11.5	6	100	0	138	0	15	50	33	1.45
158349--158478	20	6.4	20	78	8	138	16	21	24	36	1.94
158349--158456	40	2.7	40	92	0	180	16	22	23	37	1.93
158362--158482	60	2.0	62	90	6	194	17	22	23	37	1.94
158362--158540	20	8.9	19	73	12	112	17	20	21	40	1.91
158643--158682	15	2.7	15	88	7	55	55	2	2	40	1.27
158750--158817	11	6.3	11	73	14	61	41	1	1	55	1.18
163944--164007	23	2.8	22	85	4	83	26	26	26	20	1.99
164023--164240	103	2.1	103	97	0	409	36	24	14	24	1.93
164689--164812	64	1.9	67	88	8	193	27	20	18	33	1.96

Tables:   1   2   3   4   5