genome.fa.s8113.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008113.1 Hibiscus syriacus cultivar Beakdansim tig00110652_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  992058

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 576 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
841717--841811	21	4.6	19	74	14	82	36	24	18	20	1.95
842398--842435	16	2.4	16	95	0	67	10	5	28	55	1.56
856002--856345	172	2.0	171	97	1	654	26	18	22	33	1.96
856523--857213	342	2.0	342	87	3	1005	30	19	25	24	1.98
856523--857213	174	4.0	173	87	3	979	30	19	25	24	1.98
862079--862114	17	2.1	17	94	0	63	33	0	16	50	1.46
864693--864737	23	2.0	23	86	0	63	26	28	24	20	1.99
864716--865019	149	2.0	149	98	0	581	34	20	17	27	1.95
865840--865874	18	1.9	18	88	11	54	22	17	5	54	1.64
866454--866498	21	2.1	21	87	0	63	15	24	28	31	1.96
869748--869792	23	2.0	23	86	0	63	26	28	24	20	1.99
869771--870074	149	2.0	149	96	0	563	34	20	17	27	1.95
870897--870931	18	1.9	18	88	11	54	22	17	5	54	1.64
871511--871555	21	2.1	21	87	0	63	15	24	28	31	1.96
875119--875170	6	8.3	6	89	8	77	15	13	19	51	1.75
875119--875170	13	4.2	12	88	9	77	15	13	19	51	1.75
875119--875170	19	2.7	19	96	0	95	15	13	19	51	1.75
879382--879495	34	3.1	38	83	11	155	35	22	18	23	1.96
879641--879742	42	2.5	41	81	1	123	24	23	22	29	1.99
880192--880401	53	3.9	53	82	1	233	29	21	26	22	1.99
881493--881528	17	2.1	17	94	0	63	33	0	16	50	1.46
911232--911306	29	2.7	27	74	10	69	44	16	16	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911346--911443	49	2.0	49	100	0	196	32	10	14	42	1.79
922572--922639	23	3.0	23	84	0	73	29	13	10	47	1.75
922589--922650	23	2.7	23	82	0	70	32	14	9	43	1.78
923044--923126	41	2.0	41	95	0	148	22	15	19	42	1.89
927685--927740	29	1.9	29	100	0	112	8	32	8	50	1.65
929331--929488	21	7.8	20	72	7	86	38	25	17	18	1.92
929455--929609	40	3.8	40	82	4	186	37	26	18	18	1.93
929455--929608	20	7.7	20	80	7	168	37	26	18	18	1.93
929991--930061	33	2.2	33	92	0	115	11	22	18	47	1.80
930141--930250	21	5.8	20	74	17	108	45	18	24	11	1.83
930134--930250	41	3.1	38	81	14	145	46	17	25	11	1.81
930201--930257	14	3.7	14	75	20	60	43	22	24	8	1.81
930193--930273	33	2.5	33	95	0	144	46	22	22	8	1.78
930269--930360	19	5.1	19	80	12	122	11	21	19	46	1.82
932057--932769	93	7.7	93	99	0	1396	22	13	19	45	1.84
932859--932951	33	2.8	32	88	4	141	46	26	18	8	1.78
932823--932957	52	2.6	52	74	13	134	44	27	17	10	1.81
932823--932951	19	7.3	19	75	17	116	45	27	17	9	1.78
932947--933081	19	7.6	19	73	16	119	11	19	22	45	1.83
932969--933025	14	3.7	14	77	20	60	10	21	22	45	1.82
932952--933040	33	2.7	33	94	0	160	10	21	21	47	1.80
933432--933616	19	10.5	19	78	17	220	15	20	17	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933432--933630	52	3.8	52	86	10	282	14	21	18	46	1.84
933485--933630	33	4.2	33	81	13	195	13	21	18	46	1.83
936053--936098	24	2.0	23	87	12	67	36	21	15	26	1.93
936777--937046	20	13.5	20	87	1	290	20	17	25	37	1.94
937033--937115	21	4.0	21	73	6	78	25	16	24	33	1.96
937013--937111	42	2.4	43	77	11	100	21	18	23	37	1.94
939425--939483	20	2.9	19	78	9	64	40	11	23	23	1.88
939943--940034	15	6.1	15	80	0	103	38	5	17	39	1.73
939943--940034	45	2.0	45	85	0	121	38	5	17	39	1.73
939953--940046	45	2.1	45	83	0	116	38	8	18	35	1.81
939953--940035	30	2.8	30	92	0	139	39	6	18	36	1.75
940426--940467	22	1.9	22	90	0	66	21	42	21	14	1.88
946315--946368	23	2.4	22	75	9	54	24	33	16	25	1.96
946824--946864	13	3.1	13	85	3	55	36	12	7	43	1.70
947016--947055	20	2.0	20	100	0	80	30	35	10	25	1.88
949790--949859	24	3.0	24	78	16	76	22	22	24	30	1.99
949790--949851	22	2.7	23	85	9	74	20	24	25	29	1.99
958280--958309	15	2.0	15	100	0	60	13	46	26	13	1.80
961583--961680	20	5.0	19	81	10	117	37	25	15	21	1.92
962596--962649	24	2.2	24	90	0	81	24	16	16	42	1.88
965266--965318	20	2.7	20	81	0	70	24	18	18	37	1.94
965410--965459	25	2.0	25	96	0	91	26	8	22	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
965847--965883	18	2.1	18	89	0	56	32	5	10	51	1.60
965839--965887	24	2.1	24	84	3	64	36	6	14	42	1.70
966153--966239	39	2.2	39	95	0	156	48	20	13	17	1.81
966511--966548	20	1.9	20	94	0	67	13	15	26	44	1.83
968120--968219	42	2.4	42	83	6	130	24	17	33	26	1.96
970456--970487	13	2.5	13	94	0	55	75	15	9	0	1.05
970701--970748	22	2.2	22	92	0	78	20	12	43	22	1.86
970879--970963	20	4.2	20	89	0	125	20	16	24	38	1.92
970890--970972	40	2.0	40	90	2	130	21	18	26	33	1.96
970955--971000	21	2.2	21	96	0	83	34	19	26	19	1.96
977321--977402	32	2.6	32	77	11	87	42	12	2	42	1.55
980778--980890	42	2.8	42	91	4	178	17	15	20	46	1.85
980960--981093	25	5.4	24	70	19	87	48	1	0	50	1.10
981029--981070	21	2.0	21	85	0	57	50	0	0	50	1.00
981037--981119	25	3.5	24	75	22	79	46	0	0	53	1.00
980963--981167	49	4.2	48	74	17	160	47	0	0	51	1.11
981078--981112	17	1.9	19	88	11	56	54	0	0	45	0.99
981012--981113	26	4.0	27	74	18	87	50	0	0	49	1.00
981085--981131	21	2.4	19	82	10	51	53	0	0	46	1.00
981046--981167	45	2.6	47	82	12	130	45	0	0	53	1.06
981015--981132	23	4.8	26	68	21	76	49	0	0	50	1.00
981057--981181	45	2.6	45	81	13	126	48	0	0	51	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981038--981180	22	5.9	25	68	23	85	47	0	0	51	1.05
981140--981181	20	2.2	19	86	4	57	50	0	2	47	1.14
981195--981228	18	1.9	17	93	0	50	50	2	0	47	1.16
983698--983762	16	4.1	16	87	0	103	55	21	13	9	1.66
984811--984855	14	3.5	14	77	22	62	55	24	11	8	1.63
984810--984872	24	2.6	24	94	0	117	55	25	11	7	1.62
986185--986226	21	2.0	20	86	4	57	26	0	0	73	0.83
989454--989485	2	15.5	2	93	6	55	50	0	3	46	1.17

Tables:   1   2   3   4   5

The End!