Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008121.1 Hibiscus syriacus cultivar Beakdansim tig00110674_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1116347

Tables:   1   2   3   4   

This is table  4  of  4  ( 400 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
988464--988515
20
2.6
21
78
6
54
40
15
13
30
1.86
989842--989887
22
2.0
23
87
8
67
63
0
10
26
1.27
999640--999704
4
15.8
4
85
4
85
70
3
1
24
1.10
1001095--1001193
3
34.0
3
74
17
75
62
1
4
32
1.20
1001095--1001224
69
1.9
69
96
0
242
60
1
5
33
1.29
1002185--1002355
36
4.4
36
77
17
121
19
25
22
32
1.97
1002185--1002337
83
1.8
83
84
5
211
19
24
23
32
1.97
1005391--1005442
15
3.5
15
97
0
95
5
15
69
9
1.35
1008706--1009028
159
2.0
159
93
2
560
40
10
21
27
1.86
1014498--1014579
29
2.8
29
94
1
137
32
14
9
42
1.79
1015870--1015899
15
2.0
15
93
0
51
56
23
0
20
1.42
1019267--1019348
29
2.8
29
94
1
137
32
14
9
42
1.79
1023258--1023282
2
12.5
2
100
0
50
52
0
0
48
1.00
1025660--1025820
60
2.8
58
86
2
225
31
6
18
43
1.75
1025660--1025841
60
3.1
59
81
8
219
31
6
18
43
1.75
1027016--1027063
22
2.2
22
88
3
71
37
0
0
62
0.95
1029338--1029394
27
2.0
29
80
12
66
42
1
0
56
1.10
1039442--1039484
21
2.0
22
81
4
52
51
18
0
30
1.47
1042759--1042840
35
2.3
36
85
4
112
59
4
6
29
1.42
1042771--1042851
35
2.4
33
85
6
110
61
4
6
27
1.40
1050570--1050725
60
2.6
60
81
1
188
33
14
13
37
1.86
1052491--1052516
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1057755--1057987
29
8.0
28
81
7
252
41
17
21
19
1.91
1057772--1057987
58
3.7
58
87
4
285
40
18
21
19
1.91
1060477--1060513
17
2.2
17
95
0
65
48
0
16
35
1.46
1064487--1064523
18
2.0
19
89
5
58
45
35
16
2
1.61
1064650--1064676
5
5.4
5
100
0
54
44
37
18
0
1.50
1064922--1065020
19
4.8
21
76
11
98
53
0
2
44
1.12
1064925--1065020
42
2.4
40
83
10
124
54
0
2
43
1.12
1070390--1070432
21
2.0
21
86
0
59
58
11
0
30
1.34
1070600--1070684
23
3.7
23
95
0
152
48
0
2
49
1.14
1070582--1070684
46
2.2
45
84
6
118
50
0
1
46
1.19
1072120--1072282
81
2.0
81
98
0
317
32
20
13
33
1.92
1074777--1074807
13
2.4
13
94
0
53
12
0
41
45
1.42
1077050--1077086
20
1.9
19
89
10
58
51
5
16
27
1.66
1085978--1086026
17
2.9
17
78
6
55
59
2
4
34
1.28
1093350--1093398
6
8.2
6
100
0
98
34
48
16
0
1.46
1099300--1099363
5
12.8
5
94
0
92
20
35
40
3
1.68
1104193--1104307
57
2.0
57
100
0
230
22
22
3
51
1.63
1114574--1114603
15
1.9
16
93
6
53
53
0
3
43
1.17

Tables:   1   2   3   4

The End!