genome.fa.s8123.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008123.1 Hibiscus syriacus cultivar Beakdansim tig00110677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  770294

Tables:   1   2   3   4   

This is table  2  of  4  ( 471 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196336--196370	17	1.9	17	88	11	52	2	37	0	60	1.12
197646--197689	23	1.9	23	85	0	61	22	27	22	27	1.99
203232--203266	17	1.9	17	88	11	52	2	37	0	60	1.12
204407--204723	150	2.1	150	96	1	582	26	17	21	34	1.96
210386--210423	19	2.0	19	89	0	58	31	7	28	31	1.86
210913--210949	19	1.9	19	88	0	56	29	16	21	32	1.95
222023--222071	24	2.0	24	92	0	80	65	6	12	16	1.45
223741--223782	22	1.9	22	90	0	66	69	0	2	28	1.01
224614--224727	35	3.2	36	83	7	144	38	9	21	29	1.86
224614--224737	36	3.5	34	78	19	121	37	10	21	29	1.87
224730--225038	104	3.0	105	81	7	387	42	10	16	30	1.82
224997--225137	71	2.0	72	88	4	214	38	11	19	30	1.87
225003--225137	36	3.8	36	85	3	182	36	11	20	31	1.89
225459--225549	14	6.6	14	86	6	89	39	1	9	49	1.43
225469--225541	2	37.0	2	83	2	94	43	0	6	49	1.29
228944--229610	333	2.0	333	99	0	1318	26	21	15	36	1.93
231071--231112	22	1.9	22	100	0	84	16	9	47	26	1.77
231246--231375	20	6.4	20	68	13	77	21	16	20	40	1.91
231397--231463	20	3.4	20	78	8	75	20	14	34	29	1.93
231421--231471	19	2.6	19	87	3	66	19	11	33	35	1.88
234510--234547	17	2.3	17	90	4	60	21	2	2	73	1.07
237548--237665	31	3.8	31	86	4	166	29	15	7	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237548--237665	63	1.9	62	91	1	191	29	15	7	47	1.73
237935--238017	32	2.6	32	80	5	87	24	13	2	60	1.45
237943--238017	33	2.3	31	79	6	78	25	12	2	60	1.45
238474--238533	13	4.8	13	79	8	79	30	0	1	68	0.99
238478--238528	8	6.8	8	79	20	65	31	0	1	66	1.03
238785--238837	8	7.1	8	77	14	60	75	0	0	24	0.80
238788--238837	13	4.0	13	82	10	68	76	0	0	24	0.80
242867--242943	37	2.1	37	85	4	102	48	1	3	46	1.28
242921--242966	17	2.6	17	79	3	56	50	4	2	43	1.34
248673--248728	21	2.7	21	97	0	103	21	14	35	28	1.92
250518--250589	36	2.0	36	88	0	108	41	19	11	27	1.85
261668--261708	21	2.0	21	90	0	64	63	0	21	14	1.30
261935--261971	19	1.9	19	94	0	65	59	0	8	32	1.27
269421--269463	20	2.2	20	86	0	59	34	16	13	34	1.88
269934--270119	37	5.1	36	76	2	201	33	16	12	38	1.86
269934--270164	73	3.2	73	92	2	392	33	16	13	36	1.88
270201--270635	123	3.5	123	91	0	683	40	15	19	25	1.90
270706--270769	17	3.2	20	67	24	55	43	9	20	26	1.82
270555--270881	139	2.4	137	84	5	410	38	14	20	26	1.91
272316--272378	20	3.0	21	72	9	56	26	6	1	65	1.26
275436--275471	16	2.2	16	90	0	54	27	0	0	72	0.85
278078--278156	30	2.5	32	88	12	128	40	0	2	56	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278103--278151	15	3.3	15	72	11	55	40	0	2	57	1.10
278088--278158	30	2.4	30	100	0	142	36	0	2	60	1.11
278088--278140	18	3.3	18	70	29	64	35	0	3	60	1.15
278751--279031	112	2.5	112	80	6	307	30	17	6	45	1.74
281953--281995	18	2.6	16	81	7	50	48	0	4	46	1.22
286574--286641	34	2.0	34	86	11	95	22	20	42	14	1.88
288408--288453	17	2.8	16	83	6	65	60	2	0	36	1.09
290543--290584	11	3.9	11	78	6	50	50	2	2	45	1.27
293981--294014	17	1.9	18	88	5	52	52	8	0	38	1.33
294371--294403	15	2.2	15	100	0	66	12	21	27	39	1.88
296645--296770	64	2.0	65	88	1	191	27	20	22	29	1.98
296707--296814	46	2.4	45	81	7	121	27	18	19	34	1.95
308211--308253	18	2.6	16	81	7	50	51	0	2	46	1.13
308532--308614	41	2.0	41	81	4	96	25	20	27	26	1.99
312566--312596	15	2.1	15	100	0	62	6	32	25	35	1.82
314427--314472	17	2.8	16	83	6	65	60	2	0	36	1.09
317305--317346	11	3.9	11	78	6	50	50	2	2	45	1.27
317593--317641	21	2.3	21	89	0	80	28	14	0	57	1.38
319310--319358	25	2.0	25	91	0	80	55	0	10	34	1.34
332202--332265	25	2.6	25	94	0	110	23	14	34	28	1.93
338276--338310	13	2.8	12	87	8	52	40	0	0	60	0.97
339863--340038	39	4.4	38	80	13	169	46	2	5	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339852--339960	45	2.4	45	87	6	157	48	1	2	46	1.27
341199--341250	20	2.7	20	80	16	56	21	1	0	76	0.87
341994--342122	40	3.2	38	71	13	98	42	8	3	44	1.53
342082--342138	16	3.5	16	88	4	78	40	10	3	45	1.56
344931--344961	2	15.5	2	100	0	62	51	0	0	48	1.00
347968--348029	23	2.9	21	85	7	81	20	35	25	17	1.95
354497--354563	33	2.0	34	82	2	82	41	5	20	31	1.77
358977--359153	42	4.0	42	76	13	160	47	11	15	25	1.79
361061--361721	256	2.6	254	85	4	866	24	17	24	33	1.97
361662--361809	67	2.3	65	83	9	178	24	18	25	31	1.98
361725--361922	110	1.8	110	88	0	306	23	18	24	33	1.97
365826--366002	42	4.0	42	76	13	160	47	11	15	25	1.79
367747--367831	29	2.9	29	82	0	98	17	40	27	15	1.89
367974--368060	29	3.0	29	84	0	102	13	27	39	19	1.90
373928--373958	13	2.4	13	100	0	62	32	25	25	16	1.96
376617--376663	20	2.4	19	82	6	58	31	12	6	48	1.66
378154--378236	2	41.5	2	100	0	166	49	0	0	50	1.00
391616--391704	23	3.9	23	74	0	70	32	20	23	23	1.98
391618--391707	46	2.0	46	88	0	135	32	21	23	23	1.98
393670--393694	12	2.1	12	100	0	50	40	16	0	44	1.47
395841--395923	23	3.6	23	81	0	103	27	27	26	18	1.98
397547--397595	19	2.6	19	93	0	80	24	32	14	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397902--397926	12	2.1	12	100	0	50	40	16	0	44	1.47
409424--409466	20	2.2	20	91	4	70	37	27	18	16	1.92
410347--410400	24	2.2	24	90	0	81	22	18	18	40	1.91
412955--413122	19	9.3	19	74	14	131	45	19	21	13	1.84
412997--413122	52	2.4	52	88	2	173	46	18	21	13	1.83
413056--413118	33	1.9	33	93	0	108	49	19	20	11	1.78
413118--413192	19	4.2	19	70	25	65	16	20	20	44	1.87
413128--413193	19	3.7	19	76	19	88	13	21	18	46	1.83
413300--413336	14	2.6	14	91	0	65	45	21	0	32	1.52
415237--415325	14	5.6	14	70	23	61	44	20	24	10	1.82
415252--415349	19	5.7	19	70	22	90	44	20	23	11	1.83
415222--415346	33	3.8	33	93	2	200	44	20	23	12	1.84
415346--415468	19	7.3	17	65	25	66	10	20	22	46	1.81
415361--415452	14	5.9	14	69	22	58	8	20	21	48	1.76
415356--415468	33	3.4	33	95	0	199	8	21	22	47	1.77
415556--415829	94	3.1	93	87	6	381	46	18	12	22	1.82
415673--415829	82	1.9	82	93	0	269	44	16	13	25	1.84
417533--417588	20	2.8	20	81	10	78	39	21	23	16	1.92
417573--417628	14	3.6	14	74	21	58	42	23	25	8	1.82
417524--417669	19	8.1	19	73	17	114	43	20	22	13	1.86
417524--417647	33	3.5	33	86	7	158	43	20	22	12	1.86
417665--417786	20	6.5	19	78	11	74	11	18	20	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417715--417786	20	3.5	20	86	5	101	13	16	18	51	1.77
418344--418557	20	10.6	20	80	6	243	18	18	25	37	1.93
418346--418557	41	5.2	41	93	1	347	18	18	25	37	1.93
418346--418618	40	6.7	42	85	7	291	18	18	24	38	1.93
418571--418618	20	2.4	20	86	6	62	14	18	20	45	1.85
418346--418618	81	3.4	81	83	6	329	18	18	24	38	1.93
418668--418721	20	2.7	19	75	8	63	16	18	31	33	1.93
418787--419036	126	2.0	126	99	0	491	27	10	16	46	1.79
421115--421159	18	2.5	18	100	0	90	40	0	33	26	1.57
422526--422570	22	2.0	22	95	0	81	33	2	13	51	1.53

Tables:   1   2   3   4