genome.fa.s8123.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008123.1 Hibiscus syriacus cultivar Beakdansim tig00110677_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  770294

Tables:   1   2   3   4   

This is table  4  of  4  ( 471 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611938--611998	11	5.9	11	72	14	58	37	1	0	60	1.07
611938--612026	40	2.3	39	94	2	151	37	3	1	58	1.22
614880--615155	138	2.0	138	100	0	552	39	16	21	21	1.92
622238--622297	25	2.5	24	82	12	70	5	3	13	78	1.04
622253--622297	17	2.7	18	86	13	53	0	4	15	80	0.87
622260--622298	8	4.8	8	87	6	60	0	2	12	84	0.72
624162--624199	20	1.9	20	94	0	67	23	31	26	18	1.97
631635--631674	20	2.0	20	100	0	80	40	15	35	10	1.80
634900--634968	26	2.6	26	76	15	61	49	18	10	21	1.77
644187--644300	39	2.9	38	76	11	106	37	13	0	49	1.42
644461--644509	2	24.5	2	100	0	98	48	0	0	51	1.00
645755--646131	30	12.9	29	76	10	252	38	8	1	51	1.41
646017--646072	24	2.3	25	87	9	80	37	7	0	55	1.27
645992--646099	54	2.0	55	82	12	134	37	9	0	51	1.40
645993--646115	54	2.3	54	77	16	128	38	8	0	52	1.39
646147--646257	30	3.8	29	81	8	111	54	0	6	38	1.32
646153--646266	59	2.0	58	81	10	135	53	0	6	39	1.32
659855--659979	3	42.0	3	85	4	173	34	1	0	64	1.04
665676--665995	159	2.0	161	97	2	610	33	24	14	27	1.94
669938--670273	170	2.0	168	95	4	608	39	13	21	25	1.90
672811--672901	4	19.6	5	75	17	65	82	0	15	2	0.77
672812--672902	19	4.2	22	78	16	84	81	0	16	2	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672805--672901	36	2.6	37	82	12	121	80	0	16	3	0.84
672810--672889	13	5.9	13	77	12	72	83	0	13	2	0.74
672810--672872	1	63.0	1	74	0	54	87	0	12	0	0.55
673840--674291	52	8.7	52	92	4	727	24	15	23	37	1.93
673840--674291	154	2.9	154	90	5	714	24	15	23	37	1.93
673840--674291	206	2.2	208	92	4	745	24	15	23	37	1.93
674876--675479	113	5.3	113	90	4	919	37	14	19	28	1.91
674876--675474	224	2.6	226	89	3	884	38	14	19	27	1.91
675421--675463	22	1.9	23	85	4	61	48	9	27	13	1.73
675429--675552	60	2.1	59	86	7	171	36	12	20	30	1.89
675321--675700	173	2.2	174	96	2	705	39	11	21	27	1.88
675945--676055	3	37.7	3	84	8	140	34	1	0	63	1.05
675944--676055	34	3.4	33	90	7	165	34	1	0	63	1.05
682736--684075	164	8.1	165	85	3	1408	26	20	23	30	1.98
682736--683763	329	3.1	330	90	2	1532	26	19	23	30	1.98
682734--683780	493	2.1	493	87	3	1492	26	19	23	30	1.98
682734--684129	329	4.2	324	85	5	1391	26	20	23	30	1.98
683679--684129	165	2.8	164	89	2	660	25	21	23	30	1.99
682736--684129	493	2.8	490	81	6	1280	26	20	23	30	1.98
690214--690246	2	16.5	2	100	0	66	48	0	0	51	1.00
693094--693127	2	17.5	2	87	6	52	47	0	2	50	1.16
693479--693616	21	6.7	21	69	6	59	34	25	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693584--693952	20	18.5	20	85	4	458	34	26	18	20	1.96
694614--694668	24	2.3	24	83	0	65	25	12	21	40	1.89
694635--694681	24	2.0	24	86	0	67	25	12	21	40	1.89
697161--697465	19	17.4	19	78	17	358	46	18	20	14	1.83
697214--697291	14	4.8	15	71	22	52	43	19	24	12	1.86
697228--697446	33	6.2	33	80	16	214	46	17	21	14	1.84
697189--697465	52	5.2	52	90	7	386	46	17	21	14	1.83
697161--697503	141	2.5	137	90	6	514	45	18	20	14	1.85
697231--697503	52	5.2	51	90	5	240	45	17	21	15	1.85
697494--697595	19	5.6	19	85	12	151	14	23	17	44	1.86
697702--697738	14	2.6	14	91	0	65	45	21	0	32	1.52
699718--699774	14	3.7	14	77	20	60	45	22	21	10	1.82
699699--699791	33	2.8	33	93	0	159	47	21	19	11	1.81
699662--699796	19	7.6	19	76	16	119	45	23	18	11	1.82
699792--699920	19	7.3	19	75	17	125	8	16	28	46	1.76
699792--699883	33	2.8	33	91	3	141	7	17	28	46	1.75
699964--700528	93	6.1	93	98	0	1089	46	18	12	22	1.82
702234--702323	14	5.7	14	74	23	81	42	23	25	8	1.83
702226--702340	33	3.5	33	95	0	212	45	20	24	9	1.81
702233--702345	19	6.8	18	72	23	88	43	22	24	9	1.83
702357--702410	14	3.6	14	77	18	63	9	25	24	40	1.85
702352--702398	18	2.9	17	75	18	55	8	23	23	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702531--702601	33	2.2	33	92	0	115	47	18	22	11	1.80
702783--702837	22	2.5	22	81	0	74	20	16	40	23	1.91
702983--703175	20	9.6	20	82	5	219	19	19	25	35	1.95
702983--703175	60	3.2	60	83	0	251	19	19	25	35	1.95
703231--703282	20	2.6	20	96	0	95	21	13	26	38	1.90
706106--706155	26	1.9	26	84	8	66	42	10	24	24	1.85
707212--707250	2	19.5	2	100	0	78	51	0	0	48	1.00
711596--711629	2	17.0	2	100	0	68	50	0	0	50	1.00
711653--711677	12	2.1	12	100	0	50	8	8	16	68	1.38
713496--713549	26	2.0	29	82	17	71	55	0	5	38	1.23
713496--713549	28	2.0	28	85	10	76	55	0	5	38	1.23
718734--718768	2	17.5	2	100	0	70	0	48	0	51	1.00
719160--719192	3	11.0	3	93	0	57	30	0	3	66	1.06
722958--723056	45	2.1	47	83	9	123	29	10	20	40	1.85
732704--732901	8	26.3	7	70	20	82	74	0	17	7	1.06
732723--732844	14	8.9	13	71	9	75	76	0	17	5	1.03
732859--732900	7	5.7	7	83	10	57	76	0	14	9	1.02
732721--732901	33	5.4	33	70	20	94	75	0	17	7	1.06
732707--732913	9	24.4	8	70	21	79	74	0	17	7	1.06
734169--734265	51	2.1	41	69	30	104	29	15	28	25	1.96
734160--734603	55	8.3	55	90	5	501	27	15	26	30	1.96
738080--738130	23	2.2	23	92	0	84	37	3	3	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
738265--738404	69	2.1	67	94	2	244	36	13	11	38	1.81
739747--739800	25	2.2	25	83	6	65	38	5	1	53	1.35
751208--751258	19	2.6	20	81	3	68	33	13	21	31	1.92
754791--754822	13	2.5	13	89	0	55	15	46	21	15	1.83
754769--754828	18	3.2	18	88	7	84	16	48	20	15	1.81
754812--754845	15	2.3	15	100	0	68	11	35	26	26	1.91
754809--754853	8	5.5	8	89	10	65	13	35	26	24	1.92
756141--756222	43	1.9	42	90	2	128	53	2	21	21	1.57
757368--757424	12	4.8	12	80	8	71	15	17	17	49	1.81
757331--757439	48	2.3	49	82	3	123	19	15	16	48	1.81
757345--757424	24	3.3	24	85	0	106	20	16	17	46	1.84
759581--759612	13	2.5	13	89	0	55	15	46	21	15	1.83
759562--759618	18	3.0	18	87	7	78	15	47	21	15	1.82
759599--759660	8	7.5	8	84	14	74	14	33	25	25	1.94
759602--759642	7	5.6	7	91	8	64	12	34	26	26	1.92
759602--759650	15	3.1	15	94	5	80	12	34	26	26	1.92
762171--762240	12	5.8	12	75	6	61	17	11	18	52	1.73
762134--762242	24	4.5	24	75	6	96	20	13	17	48	1.80
763370--763408	21	1.9	20	84	5	51	33	23	15	28	1.95
765623--765680	27	2.2	25	79	11	62	44	3	0	51	1.18
765876--765958	38	2.2	37	82	8	96	54	1	0	44	1.08
765855--765990	62	2.1	64	94	4	240	55	1	0	43	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
765971--766018	11	4.4	11	82	15	55	70	0	0	29	0.87

Tables:   1   2   3   4

The End!