genome.fa.s8143.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008143.1 Hibiscus syriacus cultivar Beakdansim tig00110705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1142845

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 495 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7398--7658	137	1.9	138	89	3	411	28	23	17	30	1.97
10172--10255	29	2.8	30	73	8	82	15	32	9	42	1.79
10648--10752	30	3.6	29	71	6	86	17	29	8	44	1.78
12731--12786	23	2.4	24	84	3	69	73	1	0	25	0.93
12740--12811	36	2.0	35	89	2	108	68	4	0	27	1.08
12784--12817	17	1.9	18	88	5	52	64	5	0	29	1.17
14363--14552	30	6.3	30	79	4	204	21	25	11	42	1.85
19707--19746	20	2.0	20	85	0	53	67	5	0	27	1.11
26222--26345	34	3.6	34	93	0	194	45	20	8	25	1.78
48684--48839	41	3.8	41	95	0	276	15	21	25	37	1.93
48728--48845	21	5.7	21	70	18	95	16	21	26	36	1.94
48708--48818	20	5.4	20	67	19	68	13	22	24	39	1.90
49258--49362	36	2.7	40	82	14	146	42	20	20	16	1.89
49501--49534	17	2.0	17	100	0	68	23	5	11	58	1.55
49769--50024	138	1.8	141	89	4	403	29	11	7	51	1.64
50072--50116	22	2.0	24	91	8	76	48	2	2	46	1.26
50077--50124	22	2.2	22	85	7	62	52	2	0	45	1.12
50019--50157	74	1.9	74	87	3	208	40	5	6	48	1.51
64124--64361	128	1.9	129	80	7	288	21	35	13	30	1.91
65607--65822	107	2.0	107	98	0	414	38	1	22	37	1.63
66190--66407	103	2.1	103	94	0	391	26	12	23	36	1.91
66423--66489	23	2.9	23	86	8	91	22	20	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80505--80545	17	2.4	17	95	0	73	36	14	7	41	1.74
90227--90271	22	2.0	22	86	4	63	51	0	17	31	1.46
93995--94308	157	2.0	153	92	4	522	38	24	9	27	1.87
103132--103165	16	2.1	16	88	0	50	67	11	0	20	1.21
108897--108924	6	4.7	6	100	0	56	32	50	17	0	1.47
109587--109665	20	3.9	20	80	3	95	37	24	22	15	1.92
109593--109761	41	4.3	40	76	17	183	36	25	20	18	1.95
109602--109745	75	1.9	75	87	5	213	36	24	20	19	1.95
109687--109783	21	4.6	21	81	10	67	35	26	17	20	1.95
109729--109782	21	2.6	21	96	0	99	29	27	16	25	1.97
109708--109790	21	4.0	21	82	1	78	34	25	16	22	1.95
109808--109844	19	1.9	19	88	0	56	32	13	27	27	1.94
118164--118203	21	2.0	21	90	5	64	55	2	0	42	1.13
131138--131177	9	4.2	9	90	6	53	65	0	0	35	0.93
131333--131373	22	1.9	21	90	5	64	51	0	2	46	1.14
131330--131382	22	2.5	20	79	11	61	47	0	1	50	1.12
132799--132832	13	2.7	12	90	9	50	17	0	2	79	0.86
139943--140182	53	4.5	53	87	2	318	41	14	11	32	1.81
144311--144343	2	17.0	2	93	6	59	51	0	0	48	1.00
144556--144580	13	1.9	13	100	0	50	12	0	0	88	0.53
145552--145588	2	18.5	2	100	0	74	51	48	0	0	1.00
153748--153797	14	3.7	14	75	17	52	42	4	4	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159326--159381	23	2.4	23	87	0	76	26	25	26	21	1.99
159409--159622	103	2.1	103	97	0	410	36	25	12	25	1.91
160071--160198	64	2.0	67	87	7	192	28	18	18	34	1.95
160083--160240	64	2.5	62	81	11	167	28	20	17	34	1.95
160213--160282	19	3.7	19	100	0	140	21	27	25	25	1.99
163944--163981	15	2.5	15	91	0	58	7	15	65	10	1.45
164744--164774	6	5.2	6	96	0	53	35	45	19	0	1.51
164766--164795	5	5.8	5	96	4	51	23	36	40	0	1.55
166638--166662	2	12.5	2	100	0	50	52	0	0	48	1.00
168400--168440	21	2.0	21	85	0	55	17	12	9	60	1.57
172435--172459	5	5.0	5	100	0	50	80	0	0	20	0.72
176538--176585	22	2.2	22	88	3	71	47	0	2	50	1.12
176485--176605	52	2.3	53	77	16	128	49	1	1	47	1.21
191661--191721	29	2.1	30	87	3	88	16	16	16	50	1.78
191807--191846	20	2.0	20	85	0	53	62	0	2	35	1.09
195639--195681	22	2.0	21	86	8	61	25	0	0	74	0.82
197894--197968	28	2.7	28	91	0	123	28	12	26	33	1.92
207260--207376	50	2.3	49	74	11	110	18	33	24	23	1.97
207651--207872	111	2.0	111	90	0	354	37	8	10	43	1.69
209941--210025	35	2.5	33	76	14	82	24	8	10	56	1.60
219034--219082	22	2.2	23	92	3	82	38	4	24	32	1.74
219034--219091	22	2.6	21	84	10	64	41	3	24	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228715--228747	17	1.9	17	93	0	57	21	3	0	75	0.93
269592--269632	21	2.0	21	90	0	64	48	2	12	36	1.54
279187--279212	2	13.0	2	100	0	52	50	0	0	50	1.00
279592--279632	15	3.0	14	80	16	50	68	4	4	21	1.28
281609--281683	40	1.9	38	86	5	105	29	18	12	40	1.87
285967--287259	645	2.0	647	98	0	2509	30	11	25	32	1.91
287518--287558	11	3.7	11	90	0	64	29	21	29	19	1.98
306593--307774	588	2.0	589	99	0	2357	41	7	7	43	1.61
307988--308043	26	2.2	25	81	12	60	28	3	1	66	1.19
309012--309056	23	2.0	23	86	4	65	15	17	8	57	1.63
314357--314390	2	17.0	2	100	0	68	0	50	0	50	1.00
314390--314428	2	19.5	2	100	0	78	48	0	0	51	1.00
314598--314648	2	26.0	2	96	4	95	49	0	0	50	1.00
318647--318703	28	2.1	28	90	3	89	14	22	15	47	1.82
319681--319717	12	2.7	14	88	12	51	56	5	0	37	1.22
319718--319765	16	3.1	16	87	3	71	50	4	0	45	1.21
319709--319778	31	2.4	28	79	11	77	52	4	0	42	1.20
319709--319762	16	3.5	16	85	5	58	53	3	0	42	1.18
319867--319945	19	4.0	19	75	15	79	37	5	0	56	1.21
324604--324648	20	2.2	20	96	0	81	26	53	4	15	1.61
324843--324932	43	2.1	43	87	4	128	27	20	10	42	1.84
329517--329561	20	2.2	20	92	0	72	37	11	24	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340190--340266	39	2.0	39	87	2	111	20	31	5	42	1.74
341811--341881	29	2.4	28	80	13	81	40	1	2	54	1.23
342067--342101	13	2.5	15	90	9	56	37	2	5	54	1.39
361183--361273	3	30.3	3	100	0	182	32	0	0	67	0.91
362884--362915	14	2.3	14	100	0	64	21	18	37	21	1.94
379045--379155	31	3.6	31	95	2	179	54	9	17	19	1.69
383335--383383	26	1.9	26	87	4	73	28	4	2	65	1.22
386889--387020	63	2.1	62	79	12	137	26	13	3	56	1.52
401521--401582	2	31.0	2	100	0	124	50	0	0	50	1.00
410992--411026	17	2.1	17	100	0	70	28	11	37	22	1.89
412384--412427	23	1.9	23	90	0	70	29	27	25	18	1.98
428071--428131	16	3.6	16	78	10	52	57	6	0	36	1.25
435719--435748	14	2.1	14	100	0	60	46	20	10	23	1.80
436259--436379	61	2.1	57	85	11	160	40	20	12	26	1.88
438501--438712	104	2.0	104	92	1	354	40	13	8	37	1.76
449190--449264	29	2.6	29	84	0	96	18	40	26	14	1.90
449220--449278	29	2.0	29	90	0	91	23	33	33	8	1.85
449352--449448	36	2.7	36	96	0	185	21	23	37	17	1.94
449529--449613	29	2.9	29	83	0	107	12	29	40	17	1.87
449785--449825	15	2.6	16	81	14	50	34	0	4	60	1.18
453942--453980	20	1.9	21	89	5	62	61	2	0	35	1.10
459878--460038	64	2.5	65	85	7	195	34	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461452--461766	149	2.1	149	97	1	596	26	17	21	34	1.96
461734--461778	23	2.0	23	90	0	72	22	26	26	24	2.00
481504--481649	55	2.6	56	89	2	215	36	15	13	34	1.87
481541--481645	25	4.0	25	77	14	104	36	16	14	33	1.89
481516--481649	56	2.4	55	89	1	205	36	14	14	33	1.88
481990--482057	32	2.1	33	86	8	95	16	23	11	48	1.79
481990--482035	16	2.9	16	93	0	83	17	23	13	45	1.83
482295--482341	14	3.7	14	71	26	50	44	0	4	51	1.21
482294--482343	23	2.1	24	96	3	93	48	0	4	48	1.20
482525--482558	14	2.4	14	85	0	50	23	0	26	50	1.50

Tables:   1   2   3   4   5