Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008143.1 Hibiscus syriacus cultivar Beakdansim tig00110705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1142845

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 495 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1104327--1104630
41
7.4
41
93
0
520
32
20
22
24
1.97
1104761--1104820
6
10.5
6
94
1
90
30
51
18
0
1.46
1104783--1104823
5
7.6
5
97
2
55
26
53
19
0
1.45
1105366--1105433
20
3.3
21
88
12
90
22
19
19
39
1.92
1105382--1105433
20
2.6
20
100
0
104
23
21
17
38
1.93
1107797--1107844
8
5.8
8
78
9
51
20
0
29
50
1.49
1107796--1107844
17
2.9
17
96
0
89
20
0
30
48
1.50
1112868--1112907
18
2.2
18
86
8
55
10
30
10
50
1.69
1113017--1113203
60
3.1
60
77
4
207
28
41
12
18
1.86
1116190--1116244
5
11.4
5
96
1
87
0
41
23
34
1.55
1116245--1116361
6
20.5
6
91
4
149
2
16
51
29
1.58
1121731--1121803
37
2.0
37
86
7
105
47
1
1
49
1.18
1133474--1133553
28
2.8
29
70
11
74
42
2
6
48
1.41
1134706--1134730
13
1.9
13
100
0
50
16
16
16
52
1.76
1141253--1141299
24
2.0
24
83
8
60
57
12
2
27
1.47

Tables:   1   2   3   4   5

The End!