genome.fa.s8156.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008156.1 Hibiscus syriacus cultivar Beakdansim tig00110722_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  820393

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 528 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771299--771392	20	4.7	20	77	2	98	40	19	19	21	1.92
771944--772109	19	8.5	19	88	4	197	48	21	18	11	1.80
772141--772206	33	2.0	34	87	3	98	12	24	19	43	1.85
772110--772234	20	6.8	19	73	13	111	12	20	16	49	1.78
773930--774309	94	4.1	94	94	1	656	21	12	18	47	1.82
774416--774498	33	2.5	33	90	0	130	49	21	19	9	1.76
774360--774518	19	8.7	19	71	17	95	47	22	17	11	1.80
774482--774521	20	2.0	20	100	0	80	50	30	15	5	1.65
774525--774622	19	5.7	19	67	22	81	10	21	21	46	1.80
774528--774636	33	3.3	33	94	0	191	10	22	21	46	1.80
774580--774637	14	3.8	14	75	20	62	8	24	22	44	1.80
775077--775165	42	2.1	42	80	0	106	21	38	16	23	1.93
776663--776717	19	2.9	19	94	0	92	47	18	20	14	1.83
776742--776859	19	6.7	19	67	19	85	12	23	20	43	1.86
776746--776839	33	2.8	33	98	0	179	12	24	19	43	1.85
776812--776866	19	2.8	19	83	2	65	18	20	21	40	1.92
779375--779428	24	2.2	24	93	0	90	40	20	18	20	1.91
779375--779442	24	2.8	24	84	0	64	38	20	17	23	1.93
780291--780417	20	6.3	21	80	8	104	31	18	22	26	1.97
780374--780416	21	2.0	21	86	4	59	37	16	25	20	1.93
787704--787737	14	2.4	14	90	9	52	44	0	0	55	0.99
788732--788804	36	2.0	37	86	5	105	47	4	1	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
788727--788807	37	2.2	37	80	8	94	50	3	1	44	1.27
792344--792378	18	2.0	17	88	5	52	31	11	22	34	1.90
792322--792502	64	2.8	63	82	3	209	27	16	26	29	1.97
792450--792500	19	2.7	19	85	8	70	25	15	35	23	1.94
792343--792502	65	2.5	65	85	3	207	27	15	26	30	1.96
792344--792551	65	3.2	64	78	14	187	27	16	25	31	1.96
792891--792942	25	2.1	25	96	0	95	32	21	0	46	1.52
800863--801043	64	2.8	63	80	3	200	28	16	25	29	1.97
800991--801029	19	2.1	19	95	0	69	25	15	38	20	1.92
800884--801043	65	2.5	65	83	3	198	28	15	25	30	1.96
801260--801299	20	2.0	21	85	14	57	45	7	5	42	1.54
802316--802371	20	2.8	20	94	0	94	16	21	37	25	1.93
802358--802402	23	2.0	23	90	0	72	33	20	24	22	1.97
802367--802416	23	2.2	23	85	0	64	34	24	20	22	1.97
806033--806071	20	1.9	21	84	5	53	25	17	7	48	1.74
808568--808634	30	2.3	30	78	2	82	35	25	7	31	1.84
809073--809311	68	3.6	68	80	7	276	39	13	7	39	1.73
809214--809447	94	2.5	94	90	2	373	38	14	10	36	1.81
809376--809430	26	2.1	26	90	6	85	36	12	10	40	1.79
809358--809530	81	2.2	80	89	3	258	34	14	10	40	1.80
809776--809915	26	5.3	27	74	12	119	35	7	15	42	1.74
809766--809936	80	2.1	80	88	2	263	38	7	14	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
809942--810128	39	5.2	37	64	24	105	35	5	16	42	1.70
809890--810147	142	1.8	141	88	2	401	37	5	15	41	1.70
809889--810136	69	3.6	68	82	9	304	37	5	15	41	1.70
814849--814881	14	2.4	14	94	0	57	30	30	6	33	1.82

Tables:   1   2   3   4   5

The End!