genome.fa.s8161.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008161.1 Hibiscus syriacus cultivar Beakdansim tig00110730_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  673301

Tables:   1   2   3   4   

This is table  2  of  4  ( 371 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266513--266575	23	3.0	20	79	11	72	22	33	25	19	1.97
271532--271639	32	3.5	32	86	6	141	18	29	25	25	1.98
271806--271838	4	8.5	4	86	6	50	3	21	0	75	0.93
283325--283382	2	29.5	2	96	3	109	50	0	0	50	1.00
291033--291067	3	11.7	3	100	0	70	0	68	0	31	0.90
292576--292615	20	1.9	22	90	10	66	35	10	27	27	1.89
296706--296745	19	2.1	19	86	9	55	72	5	22	0	1.04
297750--297813	33	1.9	33	87	0	92	35	14	21	28	1.92
297972--298042	35	2.0	36	83	2	90	25	18	16	39	1.91
298096--298215	36	3.3	37	80	6	122	31	21	10	36	1.87
298468--298534	26	2.5	26	85	4	80	29	11	11	46	1.77
298654--298726	30	2.4	30	78	19	73	26	20	13	39	1.90
303637--303698	25	2.5	26	84	10	85	20	9	0	69	1.16
303653--303695	20	2.2	19	88	12	61	23	6	0	69	1.12
315992--316024	14	2.3	15	89	5	50	21	6	0	72	1.05
317358--317408	23	2.2	23	79	6	59	27	1	1	68	1.11
320826--320900	35	2.1	37	87	5	109	38	16	14	30	1.88
321374--321453	11	7.3	11	72	20	60	35	3	1	60	1.23
321406--321444	15	2.5	15	79	4	51	35	2	0	61	1.10
326450--326498	16	3.1	16	82	8	55	81	8	10	0	0.87
326450--326537	16	5.6	17	70	20	50	77	7	14	0	0.99
327160--327210	22	2.3	22	96	0	93	35	27	11	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328070--328174	36	2.9	36	91	5	167	24	24	14	36	1.93
328070--328179	37	3.0	37	90	5	170	26	24	13	35	1.93
328189--328275	36	2.4	36	86	0	111	26	21	12	39	1.89
328217--328375	67	2.4	67	87	4	223	32	21	11	35	1.89
328940--329664	109	6.9	104	77	11	578	32	24	20	22	1.98
330129--330224	35	2.6	35	86	6	120	38	14	14	32	1.87
330665--330737	11	6.5	11	73	20	53	34	2	1	61	1.19
332469--332518	18	2.8	18	84	0	73	44	28	22	6	1.76
338627--338662	18	1.9	19	88	5	56	22	11	25	41	1.86
339704--339728	3	8.3	3	100	0	50	0	0	32	68	0.90
345680--345915	116	2.0	115	82	5	289	28	21	15	34	1.94
346301--346345	18	2.5	18	85	0	54	13	22	8	55	1.65
351694--351733	14	2.8	14	88	3	53	70	5	5	20	1.26
351700--351744	14	3.1	15	84	9	58	73	4	4	17	1.17
351827--352226	116	3.4	114	81	4	451	26	21	15	36	1.93
353353--354012	6	110.3	6	97	1	1211	15	0	33	50	1.47
354246--354293	19	2.6	18	78	12	53	70	4	2	22	1.15
355391--355456	35	1.9	34	84	9	89	43	0	3	53	1.16
365912--365950	14	2.8	14	92	0	60	23	7	28	41	1.82
368439--368486	18	2.6	18	93	3	78	37	14	22	25	1.92
370577--370617	16	2.4	18	80	8	50	26	34	0	39	1.57
376631--376693	21	3.0	21	81	9	83	26	28	20	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379766--379792	4	6.8	4	100	0	54	74	0	0	25	0.83
379790--379825	2	18.0	2	100	0	72	50	0	0	50	1.00
382371--382408	14	2.7	14	84	11	51	21	10	28	39	1.86
386434--386476	19	2.3	18	80	7	50	34	0	2	62	1.08
386534--386568	18	1.9	18	88	11	54	8	45	17	28	1.77
393575--393639	22	2.7	26	73	24	70	30	0	0	69	0.89
393573--393638	31	2.2	29	80	17	82	30	0	0	69	0.88
393573--393639	3	22.7	3	80	19	79	31	0	0	68	0.90
394077--394106	15	2.0	15	100	0	60	60	33	6	0	1.23
394969--395034	29	2.2	28	76	12	69	46	0	1	51	1.10
398979--399027	7	6.6	8	78	21	54	75	0	12	12	1.05
398968--399028	23	2.7	23	82	12	72	77	0	11	11	1.01
398987--399030	16	2.9	15	87	12	63	72	0	13	13	1.12
398987--399030	7	5.9	7	87	12	61	72	0	13	13	1.12
398987--399037	16	3.2	16	81	8	61	70	0	13	15	1.17
400631--401049	122	3.6	114	77	13	290	39	14	19	26	1.90
400734--401050	122	2.6	122	84	7	398	40	13	19	27	1.89
401271--401352	22	3.9	22	80	13	93	35	0	0	64	0.94
401264--401352	3	29.7	3	78	17	96	34	0	0	65	0.93
402892--402933	22	1.9	22	85	0	57	47	0	2	50	1.14
403739--403765	13	2.1	13	100	0	54	22	25	14	37	1.93
407997--408263	111	2.4	111	99	0	525	34	9	10	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409385--409904	267	1.9	267	98	0	1004	25	26	22	25	2.00
410927--411039	50	2.3	50	87	0	163	20	28	36	15	1.92
412768--412804	19	1.9	19	100	0	74	40	10	0	48	1.38
421819--421902	42	2.0	41	90	2	132	44	10	16	28	1.81
423876--423944	14	4.9	13	77	16	50	78	4	4	13	1.05
423856--423917	20	3.3	18	76	12	61	74	6	4	14	1.19
423901--423932	11	2.8	12	95	4	57	84	0	6	9	0.78
423906--423963	11	5.4	11	86	12	50	79	5	3	12	1.02
423925--423962	11	3.5	11	92	7	60	76	7	0	15	1.01
423929--423962	11	2.9	12	91	8	61	76	8	0	14	1.01
423872--423956	25	3.4	24	76	12	73	77	4	3	14	1.06
423990--424067	32	2.5	32	89	2	122	39	24	3	32	1.73
424087--424149	31	2.0	31	87	0	90	46	17	3	33	1.64
424005--424184	82	2.2	83	88	1	263	51	16	3	28	1.62
424275--424326	21	2.5	21	78	6	52	75	7	7	9	1.21
424335--424412	33	2.5	31	81	10	88	76	7	2	12	1.09
424556--424585	15	1.9	16	93	6	53	83	0	0	16	0.65
424627--424703	2	38.5	2	100	0	154	50	0	0	49	1.00
428456--428559	14	7.6	14	70	18	85	25	19	28	25	1.98
428470--428545	13	5.7	13	71	17	66	26	18	27	27	1.98
428455--428559	27	3.9	27	98	0	201	26	19	28	25	1.98
435318--435391	19	3.7	19	82	10	103	28	17	31	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437531--437576	16	2.9	15	93	6	74	32	19	21	26	1.97
438716--438781	14	4.6	14	78	10	55	75	1	6	16	1.07
438722--438753	17	1.9	17	93	6	57	71	0	6	21	1.07
438771--438830	25	2.5	25	83	5	70	71	10	0	18	1.13
438760--438825	25	2.7	24	69	6	60	74	9	0	16	1.06
439851--439893	19	2.2	20	91	4	70	39	11	0	48	1.40
439971--440101	2	68.0	2	69	18	73	42	3	3	49	1.39
439933--440094	14	10.9	14	69	21	91	41	4	3	49	1.42
439944--440122	33	5.4	33	75	12	111	42	5	4	48	1.45
439936--440092	6	23.1	7	69	22	63	42	4	3	49	1.41
440111--440139	13	2.1	14	93	6	51	44	10	0	44	1.38
439958--440135	73	2.5	75	82	9	210	42	5	3	48	1.43
440088--440141	21	2.5	23	77	22	64	42	7	3	46	1.49
440044--440214	93	1.9	84	80	12	191	42	4	5	46	1.48
440216--440274	11	5.5	11	80	11	77	35	1	10	52	1.45
440210--440279	32	2.3	31	85	5	97	40	1	8	50	1.42
440230--440274	20	2.2	20	88	0	63	35	2	11	51	1.50
441027--441068	21	2.0	22	85	4	59	16	7	16	59	1.58
442707--442793	45	1.9	46	90	2	140	28	24	19	27	1.98
442764--442809	20	2.3	20	100	0	92	34	28	19	17	1.94
451079--451166	45	1.9	46	93	2	151	27	25	19	28	1.99
452765--452789	13	1.9	13	100	0	50	64	12	8	16	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453054--453130	14	6.1	14	73	22	80	57	12	12	16	1.66
453059--453130	24	3.0	24	95	0	135	56	12	12	18	1.66
453069--453116	10	4.4	10	80	19	60	56	12	12	18	1.67
454592--454655	29	2.2	30	82	2	76	35	6	25	32	1.81
462443--463021	2	289.0	2	64	21	166	46	3	4	45	1.41
462449--462557	37	2.9	37	76	12	114	47	4	3	44	1.41
462443--463021	11	57.8	10	66	20	166	46	3	4	45	1.41
484529--484574	24	1.9	24	95	0	83	28	28	13	30	1.94
490219--490406	85	2.2	85	83	5	218	48	7	20	23	1.75
491511--491586	3	25.3	3	71	24	54	64	1	0	34	1.02

Tables:   1   2   3   4