genome.fa.s8167.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008167.1 Hibiscus syriacus cultivar Beakdansim tig00110748_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1661898

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259671--259697	14	1.9	14	100	0	54	22	40	29	7	1.81
259684--259717	10	3.4	10	84	15	52	23	38	29	8	1.85
259671--259775	33	3.2	33	84	1	120	24	30	34	10	1.89
259702--259788	33	2.6	33	87	3	113	26	26	36	10	1.88
259792--259847	29	1.9	29	100	0	112	19	30	39	10	1.86
259918--259974	29	2.0	29	100	0	114	19	31	35	14	1.91
261636--261995	135	2.6	137	83	5	392	27	10	13	48	1.75
261681--262026	139	2.5	138	82	5	434	28	10	13	47	1.76
262978--263051	20	3.6	21	76	20	68	39	10	20	29	1.86
263465--263574	54	2.0	54	94	0	193	30	12	19	37	1.89
268669--269005	56	6.0	56	87	3	453	35	17	11	35	1.87
275601--275970	56	6.6	56	90	1	564	34	17	10	36	1.85
279136--279318	54	3.4	54	93	0	294	29	13	18	38	1.89
279242--279398	84	1.9	84	87	0	233	28	14	21	36	1.92
279188--279438	138	1.8	138	86	1	369	29	12	19	38	1.88
283806--283836	16	1.9	16	93	0	53	41	48	3	6	1.45
287891--287937	22	2.1	22	100	0	94	27	27	8	36	1.86
293575--293663	32	2.8	32	83	6	117	38	29	12	20	1.89
295352--295388	2	18.5	2	100	0	74	51	0	0	48	1.00
297715--297868	30	5.2	30	73	13	106	37	11	1	50	1.46
297717--297808	28	3.2	28	83	6	112	38	10	1	50	1.45
297860--297926	24	2.7	26	84	11	88	41	4	0	53	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297818--297926	49	2.1	52	83	11	136	36	8	0	54	1.37
297841--297930	26	3.5	26	72	18	80	35	7	1	55	1.36
297977--298074	27	3.6	27	75	8	81	52	3	7	37	1.45
298018--298078	28	2.1	28	84	3	77	52	1	8	37	1.41
333816--333875	27	2.1	28	81	6	68	46	16	15	21	1.83
333816--333886	28	2.6	27	79	4	70	45	18	14	22	1.85
364287--364362	12	6.3	12	73	14	68	42	6	1	50	1.37
364287--364368	23	3.4	24	80	11	80	40	6	1	52	1.34
364725--365223	55	9.1	55	83	1	597	31	20	19	28	1.97
365982--366252	45	6.0	44	76	6	215	42	19	13	24	1.87
378671--378821	77	1.9	79	81	7	184	45	8	3	42	1.53
384054--384096	15	3.2	13	78	15	52	67	0	9	23	1.19
384108--384139	2	16.0	2	100	0	64	50	0	0	50	1.00
384229--384322	27	3.4	28	79	11	104	41	8	1	48	1.40
384229--384328	28	3.6	28	84	9	114	41	9	2	48	1.46
401339--401399	30	2.0	30	96	0	113	44	16	8	31	1.77
401802--401854	17	3.1	17	86	0	70	41	5	13	39	1.68
405841--405885	24	1.9	23	90	4	72	17	13	13	55	1.69
405903--406316	207	2.0	207	100	0	828	31	10	18	38	1.85
406832--406884	24	2.2	24	89	0	79	11	15	52	20	1.72
414227--414619	198	2.0	198	84	4	524	37	6	8	47	1.61
419954--419996	20	2.2	20	91	0	68	18	4	20	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419999--420071	23	3.2	23	64	24	64	41	6	23	28	1.80
419993--420178	45	4.1	45	88	6	243	39	7	21	31	1.81
419993--420191	91	2.2	90	84	3	267	40	7	22	30	1.80
421113--421923	415	2.0	411	85	4	1028	44	7	8	38	1.65
423894--423939	22	2.0	22	83	12	56	52	13	2	32	1.52
426270--426394	44	2.8	44	82	10	153	32	21	8	37	1.83
431942--431972	6	5.2	6	100	0	62	32	35	16	16	1.91
433692--433824	47	2.9	45	87	6	187	33	21	7	36	1.82
441115--441240	47	2.8	45	88	5	182	31	22	7	38	1.83
441334--441470	59	2.3	58	78	2	157	29	23	18	28	1.97
445453--445510	26	2.2	26	78	0	62	8	6	10	74	1.23
449729--450064	45	7.4	45	88	3	389	25	24	12	38	1.90
449764--450073	45	6.9	45	90	1	453	23	25	12	38	1.90
450491--450552	19	3.1	19	78	13	70	25	32	14	27	1.95
450579--450626	20	2.4	21	82	10	64	20	29	14	35	1.93
450590--450627	20	1.9	20	94	0	67	18	28	15	36	1.92
458360--458515	32	4.9	32	78	6	154	30	21	14	32	1.94
458360--458517	64	2.5	64	80	2	174	31	21	14	32	1.93
462670--462839	90	1.9	88	92	2	286	38	11	6	43	1.67
463219--463381	90	1.8	89	91	1	272	43	6	9	40	1.63
470031--470198	90	1.9	89	94	1	300	45	6	11	36	1.67
475093--475265	90	1.9	89	88	3	258	43	6	10	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480972--481007	17	2.0	18	89	10	56	61	0	27	11	1.30
488860--488943	26	3.3	26	70	14	68	64	0	17	17	1.30
488976--489009	17	1.9	18	88	5	52	32	0	38	29	1.58
493068--493127	28	2.2	27	82	11	70	8	13	3	75	1.16
493443--493476	17	1.9	18	88	5	52	32	0	38	29	1.58
498855--498907	20	2.7	20	85	8	72	30	16	13	39	1.87
499717--499770	21	2.6	21	96	0	99	31	35	18	14	1.91
509087--509144	29	2.0	29	100	0	116	17	13	17	51	1.76
510883--510947	28	2.3	29	77	20	75	24	1	12	61	1.39
514033--514072	20	2.0	21	90	5	64	42	20	7	30	1.79
525371--525462	30	3.0	30	96	1	166	22	1	38	38	1.62
526748--526797	24	2.0	25	92	3	84	32	10	12	46	1.74
544768--544795	14	2.0	14	100	0	56	57	0	0	42	0.99
545481--545541	18	3.3	18	82	11	70	77	6	1	14	1.05
545481--545541	19	3.3	19	82	15	74	77	6	1	14	1.05
547685--547887	36	5.6	35	71	6	129	40	10	18	30	1.84
547747--547884	71	1.9	71	86	0	195	39	12	21	26	1.89
547627--547939	74	4.3	73	77	6	269	41	10	17	30	1.84
547822--547962	74	1.9	74	80	2	167	37	12	21	27	1.90
550506--550677	47	3.8	45	80	11	197	32	20	6	39	1.80
556762--556890	59	2.2	59	87	0	177	29	18	24	27	1.98
573463--574041	143	4.1	144	80	7	610	36	16	10	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576634--576673	21	1.9	21	89	0	62	30	10	10	50	1.69
583885--583927	22	1.9	23	85	4	61	58	11	4	25	1.52
587535--588065	81	6.6	81	85	4	619	33	21	8	36	1.84
588768--588843	21	3.6	21	98	0	143	32	22	10	34	1.88
590409--590459	19	2.6	20	84	6	68	49	5	11	33	1.64
593391--593430	4	10.0	4	84	10	55	0	25	0	75	0.81
607679--607789	56	2.0	56	94	0	195	31	11	16	40	1.84
619737--619767	16	1.9	16	93	0	53	35	0	25	38	1.56
627940--627972	5	6.4	5	96	3	57	42	3	0	54	1.15
631120--631162	20	2.3	19	84	15	54	20	25	18	34	1.96
638822--638863	17	2.6	16	88	11	59	23	4	35	35	1.76
640548--640654	40	2.6	39	82	10	126	46	14	9	29	1.75
640625--640714	41	2.2	41	88	4	128	38	16	8	35	1.80
654778--654815	15	2.5	15	87	8	51	28	39	7	23	1.83
657239--657297	24	2.5	24	81	13	86	59	16	13	10	1.61
661636--661689	25	2.2	25	96	0	99	29	25	22	22	1.99
663829--663883	18	2.9	20	84	13	80	43	5	10	40	1.63
664583--664658	30	2.5	30	93	0	134	28	15	28	26	1.96
664767--664799	16	2.1	16	100	0	66	24	0	42	33	1.55
665434--665469	17	2.2	16	95	5	63	38	16	16	27	1.90
667427--667477	20	2.6	19	81	3	66	31	11	11	45	1.77
668777--668829	27	2.0	27	92	0	88	28	33	7	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669539--669595	27	2.2	25	87	6	87	61	12	15	10	1.57
669538--669594	25	2.1	28	90	9	93	63	12	15	8	1.52
671947--671995	21	2.3	21	96	0	89	44	20	20	14	1.86
690564--690593	9	3.2	9	90	9	51	0	20	0	80	0.72
690564--690599	5	7.2	5	87	12	56	0	19	0	80	0.71
693713--693761	26	1.9	26	83	4	64	30	18	32	18	1.95
704842--704892	19	2.6	20	87	3	77	47	5	13	33	1.67
725207--725331	44	2.8	45	86	7	173	32	21	8	38	1.83
730820--730844	6	4.2	6	100	0	50	32	36	16	16	1.90
732548--732673	47	2.8	45	85	5	164	32	23	7	36	1.84

Tables:   1   2   3   4   5