genome.fa.s8167.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008167.1 Hibiscus syriacus cultivar Beakdansim tig00110748_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1661898

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1470821--1470925	36	2.9	36	91	1	167	30	34	4	30	1.78
1471910--1471969	30	2.0	31	86	3	86	28	8	10	53	1.63
1476960--1477022	17	3.6	17	78	4	72	44	7	14	33	1.74
1476965--1477011	18	2.7	18	80	3	60	44	8	14	31	1.76
1478054--1478097	21	2.1	21	83	8	54	31	25	2	40	1.68
1480009--1480060	19	2.6	21	90	6	81	46	5	13	34	1.67
1483431--1483491	13	5.1	11	73	23	52	0	19	3	77	0.91
1483431--1483491	18	3.3	18	80	17	72	0	19	3	77	0.91
1484160--1484211	19	2.6	21	90	6	81	46	5	13	34	1.67
1489859--1489900	15	2.7	15	88	3	57	21	9	0	69	1.17
1490669--1490713	8	5.4	8	81	7	54	13	4	0	82	0.82
1492207--1492269	17	3.6	17	82	4	81	42	7	14	34	1.75
1492212--1492258	18	2.7	18	86	3	69	42	8	14	34	1.77
1493749--1493825	31	2.5	31	100	0	154	16	28	23	31	1.96
1497728--1497804	31	2.5	31	100	0	154	16	28	23	31	1.96
1502818--1502922	36	2.9	36	90	1	167	30	34	4	30	1.78
1503234--1503302	33	2.1	33	83	5	86	33	1	36	28	1.67
1503288--1503373	13	7.2	12	72	22	58	29	3	37	30	1.74
1503273--1503374	36	2.9	36	94	1	170	26	4	36	32	1.78
1509151--1509218	33	2.1	33	83	5	84	30	1	36	30	1.67
1512966--1513025	30	2.0	31	86	3	86	28	8	10	53	1.63
1513914--1513964	20	2.6	20	90	3	77	35	15	5	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1517764--1517808	24	2.0	22	82	8	54	35	15	15	33	1.89
1519040--1519092	23	2.3	24	83	6	65	13	15	13	58	1.64
1519040--1519092	24	2.3	25	81	12	60	13	15	13	58	1.64
1521252--1521319	33	2.1	33	83	5	84	30	36	1	30	1.67
1525534--1525601	33	2.1	33	83	5	84	30	36	1	30	1.67
1527682--1527724	23	1.9	21	81	13	50	34	13	18	32	1.90
1529223--1529307	11	7.2	11	72	22	66	31	36	3	28	1.74
1529220--1529321	36	2.9	36	94	1	170	32	36	4	26	1.78
1529221--1529337	36	3.4	34	85	11	130	30	36	3	29	1.74
1529221--1529360	36	4.1	33	84	9	88	30	36	2	30	1.72
1531306--1531348	22	2.0	22	86	4	61	32	18	23	25	1.97
1533243--1533291	13	3.8	13	82	15	66	28	2	36	32	1.69
1533241--1533294	25	2.2	25	93	3	92	29	1	35	33	1.69
1533696--1533764	33	2.1	33	83	5	86	31	1	36	30	1.67
1533750--1533835	13	7.2	12	72	22	58	29	3	37	30	1.74
1533735--1533836	36	2.9	36	94	1	170	26	4	36	32	1.78
1536696--1536798	34	3.0	34	83	9	104	31	35	1	31	1.69
1542376--1542478	34	3.0	34	83	9	104	31	35	1	31	1.69
1546175--1546223	23	2.1	24	81	11	57	63	0	22	14	1.30
1546499--1546567	33	2.1	33	83	5	86	31	1	36	30	1.67
1546553--1546638	13	7.2	12	72	22	58	30	3	36	30	1.74
1546538--1546639	36	2.9	36	91	1	161	28	3	35	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1550631--1550681	20	2.6	20	84	3	68	33	15	5	45	1.71
1554924--1555060	68	2.0	69	97	1	258	27	29	21	21	1.98
1555823--1555879	27	2.1	27	83	6	71	14	15	10	59	1.60
1558040--1558082	23	1.9	21	81	13	50	37	13	16	32	1.88
1559314--1559370	27	2.1	27	83	6	71	12	15	12	59	1.61
1562056--1562098	23	1.9	21	81	13	50	34	13	18	32	1.90
1563331--1563387	27	2.1	27	83	6	71	12	15	12	59	1.61
1566178--1566263	11	7.2	12	74	22	67	29	2	37	31	1.70
1566161--1566245	11	7.2	12	70	26	65	29	2	36	31	1.70
1566160--1566264	36	2.9	36	92	1	176	28	3	36	31	1.75
1566643--1566711	33	2.1	33	86	5	95	31	0	36	31	1.58
1566697--1566782	13	7.2	12	72	22	58	29	3	37	30	1.74
1566695--1566783	36	2.5	36	96	1	162	28	4	37	30	1.77
1572428--1572490	32	2.0	32	100	0	126	30	3	34	31	1.74
1577637--1577681	14	2.9	15	87	12	65	4	13	8	73	1.23
1578122--1578207	13	7.2	12	72	22	58	29	3	37	30	1.74
1578104--1578208	36	2.9	36	95	1	185	28	4	36	30	1.78
1579722--1579764	23	1.9	21	81	13	50	34	13	18	32	1.90
1580994--1581050	27	2.1	27	83	6	71	14	15	10	59	1.60
1582729--1582772	19	2.2	20	92	4	72	31	9	6	52	1.59
1583570--1583606	11	3.1	13	85	14	53	78	0	21	0	0.75
1583569--1583606	6	6.2	6	85	14	51	78	0	21	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583826--1583856	16	1.9	16	93	0	53	12	12	0	74	1.08
1585863--1585906	20	2.2	20	88	4	63	34	9	6	50	1.61
1586706--1586742	11	3.1	13	85	14	53	78	0	21	0	0.75
1586705--1586742	6	6.2	6	85	14	51	78	0	21	0	0.74
1586962--1586998	14	2.4	16	86	8	51	13	13	0	72	1.11
1591444--1591497	21	2.6	21	96	0	99	35	7	9	48	1.63
1595360--1595408	19	2.5	20	78	21	59	24	8	0	67	1.18
1598876--1598935	30	2.0	31	83	3	77	26	8	10	55	1.61
1599845--1599895	20	2.6	19	87	9	68	33	17	5	43	1.73
1601052--1601095	6	7.2	6	87	12	63	79	0	20	0	0.73
1601052--1601095	17	2.4	17	88	11	61	79	0	20	0	0.73
1601060--1601095	11	3.1	11	92	8	54	80	0	19	0	0.71
1604377--1604409	16	2.1	16	100	0	66	33	18	6	42	1.75
1609476--1609518	20	2.2	20	87	4	61	34	9	6	48	1.62
1609864--1609889	13	2.0	13	100	0	52	23	38	0	38	1.55
1611945--1611994	14	3.9	13	73	21	52	78	2	20	0	0.86
1611934--1611994	19	3.3	18	80	17	72	77	3	19	0	0.91
1616501--1616532	6	5.2	6	92	7	55	81	0	18	0	0.70
1616501--1616532	13	2.6	12	90	9	55	81	0	18	0	0.70
1616798--1616837	19	2.0	21	85	9	57	30	32	0	37	1.58
1618715--1618819	36	2.9	36	94	1	176	30	35	5	28	1.81
1619191--1619232	17	2.7	15	85	10	50	80	4	14	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623114--1623138	13	1.9	13	100	0	50	28	40	8	24	1.83
1623117--1623195	35	2.2	36	90	2	124	31	35	5	27	1.79
1623566--1623610	17	2.6	17	89	6	65	82	6	11	0	0.84
1623566--1623611	24	1.9	24	82	8	58	82	6	10	0	0.83
1623566--1623611	18	2.6	19	83	13	62	82	6	10	0	0.83
1623635--1623681	14	3.1	15	75	12	51	72	6	19	2	1.17
1633402--1633456	23	2.4	23	100	0	110	30	36	3	29	1.75
1633402--1633473	11	6.2	11	72	22	58	31	36	2	29	1.72
1637960--1638028	33	2.1	33	83	5	86	31	1	36	30	1.67
1638014--1638099	13	7.2	12	72	22	58	29	3	37	30	1.74
1637999--1638100	36	2.9	36	94	1	170	26	4	36	32	1.78
1642381--1642449	33	2.1	33	83	5	86	31	1	36	30	1.67
1642435--1642520	13	7.2	12	72	22	58	29	3	37	30	1.74
1642420--1642521	36	2.9	36	94	1	170	26	4	36	32	1.78
1646795--1646863	33	2.1	33	83	5	86	31	1	36	30	1.67
1646849--1646934	13	7.2	12	72	22	58	29	3	37	30	1.74
1646834--1646935	36	2.9	36	94	1	170	26	4	36	32	1.78
1648796--1648838	23	1.9	21	81	13	50	34	13	18	32	1.90
1650055--1650114	23	2.6	23	86	2	84	8	20	10	61	1.53
1652649--1652691	20	2.2	20	87	4	61	32	9	9	48	1.67
1653501--1653535	18	1.9	18	94	0	61	82	0	17	0	0.66

Tables:   1   2   3   4   5

The End!