genome.fa.s8179.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008179.1 Hibiscus syriacus cultivar Beakdansim tig00110776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  726026

Tables:   1   2   3   

This is table  3  of  3  ( 339 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521929--522081	77	2.0	78	87	2	220	55	7	7	28	1.56
523673--523717	22	2.0	24	82	8	58	33	0	2	64	1.06
524471--524510	21	1.9	21	84	0	53	42	2	5	50	1.37
525250--525290	21	2.0	21	85	0	55	31	31	19	17	1.95
525625--525695	6	11.8	6	93	0	106	22	0	43	33	1.54
528723--529113	199	2.0	198	95	3	716	32	18	15	32	1.92
530211--530239	2	14.5	2	100	0	58	51	0	0	48	1.00
530849--530907	30	2.0	30	93	0	100	10	33	23	32	1.88
531792--531840	21	2.3	21	96	0	89	28	20	20	30	1.98
531933--531963	16	1.9	16	93	0	53	54	16	9	19	1.68
532381--532421	16	2.6	16	100	0	82	24	12	19	43	1.85
536164--536260	49	2.0	49	89	2	151	40	20	8	30	1.82
537610--537642	17	2.0	17	88	5	50	33	36	6	24	1.80
543725--543757	17	2.0	17	88	5	50	33	36	6	24	1.80
550184--550238	27	2.0	27	100	0	110	32	20	7	40	1.80
552099--552130	11	2.9	11	95	0	55	37	53	9	0	1.34
558577--558719	64	2.2	64	82	8	175	31	23	16	27	1.96
561526--561582	23	2.6	22	86	5	80	29	15	15	38	1.89
562004--562048	19	2.3	20	84	3	56	20	0	15	64	1.29
563487--563526	21	1.9	21	84	0	53	15	0	22	62	1.32
564351--564407	15	3.7	15	75	9	60	15	24	35	24	1.95
564339--564407	32	2.2	32	89	0	102	17	24	33	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570253--570395	67	2.1	67	84	2	180	29	13	13	44	1.81
570396--570820	125	3.4	125	87	2	591	28	28	18	24	1.98
570963--571045	3	27.7	3	100	0	166	33	0	0	66	0.92
578376--578423	2	24.5	2	87	4	71	50	0	0	50	1.00
585898--585922	7	3.6	7	100	0	50	16	28	44	12	1.83
593614--593660	22	2.1	22	100	0	94	38	0	29	31	1.58
608610--608636	14	1.9	14	100	0	54	59	0	0	40	0.98
612306--612342	19	1.9	19	94	0	65	32	29	16	21	1.95
612368--612414	20	2.3	20	85	0	67	27	25	19	27	1.99
612564--612598	17	2.1	17	100	0	70	34	28	5	31	1.81
613256--613305	24	2.1	24	84	0	64	22	22	16	40	1.91
613492--613528	14	2.6	14	91	4	56	51	21	21	5	1.68
615564--615598	18	1.9	18	94	0	61	54	25	2	17	1.57
615777--615914	34	3.9	34	76	13	134	35	21	19	23	1.96
615769--615919	74	2.0	74	88	2	223	35	19	19	25	1.95
615769--615883	20	6.1	20	78	15	118	35	19	19	26	1.95
615831--615932	54	1.9	53	81	2	123	35	21	19	23	1.96
615886--615947	19	3.2	19	88	2	79	29	25	19	25	1.99
615932--616014	20	4.2	19	86	7	78	14	15	28	40	1.87
615942--616014	20	3.7	20	90	3	112	12	15	28	43	1.82
617285--617340	20	2.8	20	86	0	76	51	23	14	10	1.73
617379--617408	14	2.1	14	93	0	51	50	23	20	6	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617328--617418	33	2.7	33	83	5	103	41	25	18	14	1.88
617813--617857	22	2.0	22	95	0	81	17	15	46	20	1.84
618093--618138	19	2.4	19	85	3	56	21	17	30	30	1.96
618104--618140	19	1.9	19	94	0	65	21	16	29	32	1.95
624436--624492	25	2.3	25	75	0	60	21	29	1	47	1.61
625465--625534	36	1.9	36	91	0	113	28	21	25	24	1.99
626240--626273	17	2.0	17	94	0	59	32	5	17	44	1.73
627000--627285	47	6.1	47	93	1	484	23	23	10	42	1.85
627763--627818	22	2.7	21	83	8	78	26	25	16	32	1.96
632245--632315	36	2.0	36	86	5	99	39	19	16	23	1.92
632893--632933	13	3.0	14	75	17	50	46	9	2	41	1.50
646798--646835	18	2.1	18	85	9	51	15	31	5	47	1.68
649212--649288	2	38.5	2	100	0	154	49	0	0	50	1.00
653974--654043	30	2.3	31	85	2	88	35	25	7	31	1.83
654159--654186	10	2.8	10	100	0	56	10	7	21	60	1.53
656674--656750	10	7.8	10	76	15	63	2	15	0	81	0.79
656676--656738	11	6.0	10	83	9	81	3	14	0	82	0.79
656677--656749	8	9.9	7	72	19	51	2	15	0	82	0.79
656697--656751	24	2.3	23	82	14	76	1	16	0	81	0.77
656671--656753	31	2.6	32	85	9	100	3	16	0	79	0.87
656678--656748	21	3.2	21	82	11	81	2	15	0	81	0.80
659688--659809	61	2.0	61	91	0	199	31	30	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660135--660183	24	2.0	24	96	0	89	40	12	12	34	1.80
660720--660790	30	2.4	30	80	4	81	35	18	9	36	1.84
661776--661849	29	2.6	29	97	0	139	40	12	8	39	1.72
666229--666294	32	2.1	32	97	0	123	13	15	13	57	1.66
668911--668966	27	2.0	27	82	3	67	23	14	17	44	1.85
670244--670500	45	5.8	45	91	3	414	30	21	7	41	1.80
670244--670500	88	2.9	90	91	3	414	30	21	7	41	1.80
670617--670738	61	2.0	61	83	0	154	31	30	15	22	1.95
672386--672483	37	2.6	37	90	4	144	33	26	2	37	1.68
672682--672755	30	2.5	29	77	14	78	32	16	9	41	1.80
674395--674474	6	13.2	6	74	18	60	5	15	1	78	0.98
674400--674488	15	6.3	15	69	24	59	5	14	2	77	1.05
674415--674479	18	3.7	18	80	13	73	3	15	1	80	0.92
674386--674479	27	3.5	26	80	14	93	5	15	1	77	1.00
674690--675033	179	1.9	179	97	0	652	34	20	11	33	1.88
677297--677553	45	5.8	45	91	3	405	31	20	7	41	1.79
677297--677553	88	2.9	89	91	3	412	31	20	7	41	1.79
677670--677784	61	1.9	61	87	0	167	32	28	15	23	1.95
679682--679760	30	2.6	30	86	7	99	32	13	8	44	1.75
685863--685941	16	4.6	16	66	22	52	26	5	1	67	1.19
685845--685929	41	2.0	41	82	10	102	27	8	1	63	1.30
685873--685964	14	6.8	13	68	19	55	23	7	1	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690280--690323	6	7.3	6	97	0	79	36	13	34	15	1.87
696310--696359	24	2.1	24	88	7	75	58	14	2	26	1.47
697495--697538	23	2.0	22	86	13	63	4	25	0	70	1.06
701879--701928	24	2.1	24	88	7	75	58	14	2	26	1.47
703145--703186	22	1.9	22	85	0	57	23	7	0	69	1.13
706227--706294	30	2.2	30	87	7	93	47	10	14	27	1.77
708019--708052	4	8.2	4	87	6	50	23	0	2	73	0.97
708762--708800	20	2.0	20	94	0	69	28	5	28	38	1.78
712828--712854	13	2.1	13	100	0	54	29	7	25	37	1.83
719948--719974	14	1.9	14	100	0	54	55	0	14	29	1.40
722244--722304	19	2.9	20	83	11	61	16	26	34	22	1.95

Tables:   1   2   3

The End!