genome.fa.s8184.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008184.1 Hibiscus syriacus cultivar Beakdansim tig00110785_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1549336

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283356--283439	29	2.9	28	78	7	87	17	25	28	28	1.98
283357--283454	10	10.3	9	74	10	79	16	25	28	29	1.97
283457--283515	22	2.7	22	94	0	109	18	47	22	11	1.81
285377--285415	17	2.3	17	81	0	51	28	2	7	61	1.37
286683--286774	34	2.7	34	93	1	157	36	10	17	34	1.85
286778--286819	21	2.0	21	95	0	75	30	4	9	54	1.53
286799--286883	37	2.4	35	86	5	109	34	3	16	45	1.64
291312--291430	35	3.3	36	83	8	145	33	5	17	42	1.73
291285--291428	72	2.1	69	83	7	175	34	6	18	40	1.77
319507--319531	2	12.5	2	100	0	50	48	0	0	52	1.00
326478--326665	93	2.0	93	94	0	331	35	9	20	34	1.85
329519--329589	19	3.7	19	96	0	124	26	19	30	22	1.98
329709--329764	19	2.9	19	94	2	94	19	16	35	28	1.93
330650--330687	18	2.1	18	95	0	67	28	23	2	44	1.67
338157--338239	38	2.2	39	97	2	159	34	7	13	44	1.71
339750--339825	35	2.2	35	92	0	125	39	23	1	35	1.63
340215--340462	130	1.9	130	92	0	415	36	15	12	35	1.85
340229--340493	130	2.0	129	81	4	300	39	13	12	33	1.83
340926--340959	16	2.0	18	88	11	54	64	5	2	26	1.30
341523--341549	2	13.5	2	100	0	54	48	0	0	51	1.00
361408--361445	2	19.0	2	100	0	76	50	0	0	50	1.00
361599--361636	19	1.9	19	94	5	67	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361602--361655	13	4.2	13	79	11	58	55	0	0	44	0.99
361602--361655	25	2.1	26	86	3	74	55	0	0	44	0.99
361933--362050	58	2.0	58	81	4	139	38	11	12	37	1.80
380809--381146	161	2.1	162	90	0	534	40	14	17	27	1.88
383402--383487	21	4.1	21	95	0	145	41	10	31	16	1.82
383525--383584	31	1.9	32	86	3	86	30	0	46	23	1.52
385308--385356	19	2.6	19	96	0	89	32	2	10	55	1.45
385612--386731	399	2.8	400	94	0	1972	35	15	18	30	1.91
385612--386731	200	5.6	200	95	0	1972	35	15	18	30	1.91
389465--389868	182	2.2	183	94	0	702	35	15	15	33	1.90
389746--389988	120	2.0	120	97	0	459	33	13	15	37	1.87
389562--390756	303	3.9	303	96	0	2115	34	14	16	34	1.88
390047--390291	120	2.0	120	94	0	427	32	13	15	38	1.86
390352--390594	120	2.0	120	94	0	423	32	13	15	38	1.86
393485--393557	23	3.2	23	94	0	119	34	4	21	39	1.73
393912--393956	22	2.0	22	83	8	56	42	11	8	37	1.72
393974--394046	23	3.2	23	90	0	110	35	5	20	38	1.76
393299--394932	489	3.4	489	95	1	2908	41	7	10	40	1.68
394463--394535	23	3.2	23	90	0	110	35	2	20	41	1.67
406686--406725	14	3.1	13	82	10	55	60	0	0	40	0.97
407770--407812	22	1.9	23	85	4	61	23	30	25	20	1.99
407884--407929	19	2.4	19	88	0	65	19	19	45	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408030--408095	9	7.2	9	78	10	53	51	0	1	46	1.10
408052--408129	3	26.0	3	81	0	93	57	0	1	41	1.07
408497--408920	113	3.8	113	89	1	611	30	19	12	37	1.89
409667--409896	83	2.8	83	93	1	399	37	23	13	26	1.91
410929--411002	8	9.6	8	85	7	75	0	12	1	86	0.63
410928--411006	12	6.2	12	85	11	97	0	13	1	84	0.68
410929--411006	18	4.1	19	83	11	97	0	12	1	85	0.65
410929--411003	1	75.0	1	72	0	60	0	12	1	86	0.63
423783--423947	29	5.7	29	85	3	190	33	6	21	38	1.78
423838--423968	29	4.5	29	85	1	113	36	5	19	38	1.74
423783--423957	59	3.0	57	80	6	183	36	5	20	38	1.76
425154--425192	19	2.1	19	86	13	55	30	5	5	58	1.41
431324--431354	2	15.5	2	100	0	62	48	0	0	51	1.00
434391--434445	17	3.3	17	73	12	51	27	1	3	67	1.17
435746--435801	20	2.8	20	97	0	103	42	21	21	14	1.88
435804--435955	57	2.7	57	93	0	259	27	13	21	36	1.92
435957--436056	20	5.0	20	86	0	128	44	15	12	29	1.82
436078--436255	57	3.1	57	95	0	311	35	21	15	28	1.93
436247--436306	21	2.8	22	87	7	79	26	10	28	35	1.89
436274--436332	29	2.0	30	90	3	93	30	10	27	32	1.89
436510--436545	15	2.4	15	90	0	54	58	2	0	38	1.13
437712--437767	2	27.5	2	96	3	103	48	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445092--445185	44	2.1	44	98	0	179	51	6	4	38	1.47
447241--447293	20	2.7	20	88	11	74	45	24	16	13	1.83
447320--447495	20	8.7	20	79	6	176	38	24	18	18	1.93
447302--447495	40	4.8	40	81	2	217	36	25	19	19	1.94
448096--448147	19	2.6	21	81	12	81	48	19	23	9	1.78
448170--448303	20	7.1	19	75	14	116	11	23	18	45	1.83
448175--448303	40	3.4	39	82	10	153	11	23	18	46	1.82
448217--448281	21	3.2	20	79	14	71	13	21	20	44	1.86
449910--450289	94	4.1	94	94	1	638	21	11	18	47	1.81
450377--450503	33	3.8	33	89	0	182	45	22	20	11	1.82
450399--450451	14	3.4	14	72	22	52	43	22	26	7	1.80
450337--450508	19	9.7	19	66	20	77	45	22	19	12	1.83
450515--450641	19	7.5	19	69	24	113	9	24	21	44	1.81
450539--450626	14	5.6	14	71	23	68	9	23	21	45	1.80
450518--450641	33	3.8	33	98	0	239	9	24	20	45	1.81
451121--451187	21	3.2	21	66	6	55	23	35	20	19	1.95
451074--451187	42	2.7	41	81	5	104	22	35	19	21	1.96
452537--452575	14	2.8	13	85	11	51	38	0	15	46	1.46
453389--453431	21	2.0	21	81	0	50	30	30	25	13	1.94
453411--453563	67	2.2	69	85	4	195	27	27	27	17	1.98
453924--453983	30	2.0	31	86	3	86	36	6	21	35	1.80
454203--454247	22	2.0	22	100	0	90	20	26	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454203--454255	22	2.4	22	93	0	79	20	24	24	30	1.99
454839--454923	33	2.5	33	86	1	116	48	21	17	12	1.80
454927--455033	20	5.8	19	72	13	89	14	19	20	44	1.86
454928--455094	33	4.8	33	79	9	190	14	20	19	45	1.85
455020--455047	14	2.0	14	100	0	56	14	21	21	42	1.88
454924--455094	19	9.7	19	70	20	111	14	20	19	45	1.85
457526--457579	24	2.2	24	90	0	81	38	22	18	20	1.93
458439--458592	20	7.6	20	76	8	116	22	19	22	35	1.96
458436--458569	41	3.3	41	83	3	164	21	20	21	36	1.95
458481--458591	41	2.7	41	86	5	127	21	18	23	36	1.94
458463--458630	20	8.3	20	75	7	90	20	18	23	38	1.94
458680--458733	20	2.7	19	75	8	63	16	18	31	33	1.93
479971--480015	23	2.0	23	82	8	56	75	0	8	15	1.03
480265--480320	24	2.3	23	84	6	67	66	1	3	28	1.19
480992--481091	35	2.8	36	84	6	121	31	15	15	39	1.87
481554--482409	98	8.2	103	80	8	755	21	21	24	32	1.98
482094--482265	55	3.4	54	66	21	152	18	24	26	30	1.97
482932--483112	65	2.8	65	91	0	290	37	11	20	30	1.88
483064--483472	37	11.8	37	66	18	184	37	11	20	29	1.89
482997--483455	102	4.5	102	91	0	731	37	11	20	30	1.88
482897--483214	167	1.9	169	90	1	514	37	11	20	30	1.88
483220--483379	50	3.2	49	65	13	126	36	11	20	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483368--483469	36	2.8	36	89	1	150	39	9	24	26	1.86
484326--484376	22	2.3	22	93	0	84	25	11	25	37	1.90
485004--485045	22	1.9	22	90	0	66	2	16	0	80	0.81
485012--485045	15	2.3	15	89	0	50	2	14	0	82	0.79
485005--485054	22	2.2	23	82	3	57	2	20	2	76	0.99
489543--489589	2	24.5	2	87	8	71	55	0	0	44	0.99
489608--489645	16	2.4	16	82	4	51	63	0	5	31	1.17
490315--490410	35	2.6	36	86	6	131	32	14	14	38	1.87
493876--493925	17	2.8	17	80	17	57	72	0	2	26	0.96
493878--493929	19	2.8	19	75	16	56	73	0	1	25	0.94

Tables:   1   2   3   4   5   6   7   8