genome.fa.s8246.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008246.1 Hibiscus syriacus cultivar Beakdansim tig00110896_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  500120

Tables:   1   2   3   

This is table  2  of  3  ( 304 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247959--247994	6	5.8	6	87	6	54	77	0	5	16	0.94
248395--248439	21	2.1	21	100	0	90	44	20	8	26	1.80
250876--250913	18	2.1	19	90	5	60	68	5	2	23	1.23
258716--258753	19	2.1	18	90	5	58	31	0	0	68	0.90
259715--259758	21	2.1	21	86	0	61	45	0	2	52	1.13
261278--261435	53	3.0	53	92	0	262	26	23	22	27	1.99
263975--264067	21	4.5	21	78	4	100	39	18	24	17	1.91
263975--264067	41	2.3	41	100	0	186	39	18	24	17	1.91
263994--264128	41	3.3	41	84	6	150	37	22	22	18	1.95
264056--264168	20	5.7	20	78	13	90	33	24	18	23	1.97
264012--264115	20	5.0	22	71	13	69	40	21	20	18	1.92
264098--264148	18	2.7	19	90	9	86	25	29	21	23	1.99
264335--264378	22	2.0	22	90	0	70	22	45	13	18	1.84
264641--264689	20	2.5	20	82	0	62	20	18	24	36	1.94
265991--266035	18	2.5	18	88	0	72	26	44	15	13	1.83
266517--266583	20	3.4	20	83	2	82	37	23	23	14	1.93
266572--266629	14	3.9	14	75	16	62	50	24	15	10	1.75
266560--266646	32	2.7	33	92	3	149	49	21	17	11	1.78
266698--266744	20	2.3	20	92	0	76	14	23	25	36	1.93
269292--269338	24	2.0	24	87	8	69	29	21	17	31	1.96
269525--269549	12	2.1	12	100	0	50	72	0	28	0	0.86
271841--271967	33	3.8	33	87	4	193	42	18	22	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271842--271974	66	2.0	66	95	0	239	41	18	22	17	1.90
271982--272038	14	3.7	14	75	20	60	8	22	22	45	1.80
271996--272056	19	3.5	19	70	21	60	11	21	21	45	1.82
271967--272056	33	2.7	33	91	0	144	13	21	21	44	1.85
272163--272199	14	2.6	14	91	0	65	45	21	0	32	1.52
273556--273622	21	3.2	21	68	4	55	19	20	35	23	1.95
273556--273678	42	2.9	41	78	7	104	21	18	37	21	1.94
275675--275806	19	7.1	19	78	11	139	44	19	23	12	1.84
275802--275868	19	3.5	19	83	2	89	8	16	23	50	1.73
276386--276479	20	4.7	20	76	7	82	24	18	24	32	1.97
277658--277691	17	2.0	17	94	0	59	32	29	14	23	1.94
280433--280510	7	11.3	7	77	13	63	17	0	29	52	1.45
280433--280510	21	3.8	20	83	8	86	17	0	29	52	1.45
280565--280615	7	7.3	7	90	0	75	21	0	33	45	1.52
280565--280615	21	2.4	21	96	0	93	21	0	33	45	1.52
285281--285317	17	2.2	17	100	0	74	67	0	0	32	0.91
285288--285332	24	2.0	22	82	8	54	60	0	4	35	1.17
287405--287458	27	2.0	28	85	10	76	66	3	0	29	1.09
294447--294530	42	2.0	42	93	4	143	40	22	7	29	1.81
295661--295746	29	3.0	29	82	0	91	19	38	29	12	1.89
295890--296003	29	3.9	29	89	0	156	14	26	41	17	1.88
298883--299000	35	3.3	36	89	5	168	33	5	18	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299392--299430	16	2.4	16	91	4	60	33	7	23	35	1.83
299392--299425	16	2.1	17	94	5	61	35	5	23	35	1.79
303487--303547	21	3.2	21	65	29	64	31	4	21	42	1.74
303479--303597	35	3.3	37	88	8	174	31	5	19	43	1.72
309535--309699	75	2.4	65	87	12	219	38	3	5	52	1.42
309705--309761	2	28.5	2	100	0	114	49	0	0	50	1.00
312135--312185	3	17.0	3	100	0	102	66	0	0	33	0.92
312205--312252	25	1.9	26	87	8	73	70	0	4	25	1.04
312287--312328	22	1.9	22	85	9	59	66	2	4	26	1.23
313401--313454	17	3.1	17	74	12	56	74	0	3	22	0.98
313402--313467	4	16.0	4	79	14	55	71	3	3	22	1.14
313402--313467	13	5.3	12	77	12	55	71	3	3	22	1.14
313468--313685	72	3.0	71	84	6	271	42	11	2	43	1.54
313468--313685	36	6.1	35	82	10	239	42	11	2	43	1.54
313677--313759	40	2.1	38	82	4	94	38	8	6	46	1.59
313466--313793	36	9.2	36	73	16	172	41	10	3	44	1.57
320892--320923	3	10.7	3	100	0	64	68	0	0	31	0.90
320988--321058	26	2.7	25	79	18	81	67	1	4	26	1.17
320974--321040	17	4.1	16	74	9	64	70	0	4	25	1.06
320976--321040	33	2.0	33	81	6	78	69	0	4	26	1.08
321027--321067	22	1.9	21	85	14	57	65	2	4	26	1.25
320944--321091	60	2.5	59	78	14	153	68	1	4	25	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321082--321169	29	3.1	29	74	19	78	60	5	9	25	1.49
322111--322151	4	9.5	4	87	12	55	75	0	0	24	0.80
322111--322151	9	4.7	9	90	6	66	75	0	0	24	0.80
322105--322151	13	3.5	13	85	14	60	74	0	2	23	0.93
322168--322346	35	5.2	36	77	14	173	44	10	1	44	1.46
322187--322346	67	2.4	68	84	8	193	45	8	1	45	1.42
322332--322360	2	14.5	2	100	0	58	48	0	0	51	1.00
322387--322469	38	2.3	38	87	6	118	44	8	4	42	1.56
326346--326517	58	2.9	56	77	10	184	31	18	5	44	1.73
326378--326416	17	2.2	19	90	9	64	33	12	5	48	1.63
326346--326517	60	2.9	57	80	5	200	31	18	5	44	1.73
326667--326791	60	2.1	60	85	8	175	40	6	20	32	1.78
326885--326912	2	14.0	2	100	0	56	50	0	0	50	1.00
327154--327223	2	35.5	2	97	2	133	50	0	0	50	1.00
331990--332022	15	2.3	15	89	5	50	21	18	21	39	1.93
336216--336268	27	1.9	28	92	3	90	32	13	18	35	1.90
339103--339252	21	7.3	19	65	24	58	54	0	2	43	1.14
339154--339239	30	2.8	31	81	11	90	53	0	2	44	1.13
339203--339238	12	2.8	13	83	8	56	52	0	0	47	1.00
340604--340636	12	2.5	14	85	14	52	36	12	9	42	1.74
340943--340995	24	2.3	23	83	9	63	52	0	0	47	1.00
340929--340983	15	3.6	15	71	20	51	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340943--340997	23	2.3	24	84	9	69	50	0	0	49	1.00
340943--341013	23	3.0	23	80	10	65	50	1	1	46	1.18
341067--341150	29	2.9	29	82	13	86	48	0	3	47	1.19
341096--341133	19	2.0	20	89	5	60	52	0	2	44	1.14
344308--344665	181	2.0	180	97	1	682	32	9	18	39	1.83
345470--345564	36	2.6	37	78	11	106	40	3	9	47	1.52
345470--345666	37	5.6	36	76	9	158	42	3	10	44	1.53
345629--345680	24	2.2	24	82	6	61	40	3	7	48	1.50
345753--345803	14	3.9	14	76	23	58	31	0	1	66	1.03
345759--345802	20	2.2	20	91	0	70	31	0	2	65	1.05
353413--353872	201	2.3	201	85	1	609	34	18	18	28	1.95
354299--354337	2	21.0	2	85	15	57	48	0	0	51	1.00
354331--354635	36	8.3	35	78	12	253	43	3	9	42	1.55
354365--354629	73	3.6	73	82	12	291	44	3	9	42	1.54
354739--354777	4	9.5	4	89	10	53	25	0	0	74	0.82
354713--354776	18	3.6	17	76	21	60	26	1	1	70	1.05
358494--358541	21	2.3	20	75	10	51	25	22	14	37	1.92
358767--358830	22	2.9	22	81	9	76	26	40	14	18	1.89
359156--359189	14	2.4	14	90	9	52	8	20	29	41	1.82
359167--359323	73	2.1	74	94	1	271	15	17	24	43	1.87
359167--359282	34	3.3	34	73	15	117	16	18	25	40	1.90
359180--359322	20	7.5	20	78	9	102	16	16	24	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359197--359322	20	6.7	20	77	10	104	14	17	23	44	1.85
359289--359332	20	2.2	20	91	0	70	11	13	20	54	1.69
361056--361175	20	5.6	20	74	14	96	42	22	16	18	1.89
361079--361122	14	3.1	14	80	0	52	52	25	13	9	1.70
361218--361366	20	7.4	20	89	0	235	17	20	24	37	1.94
361850--361958	42	2.6	41	75	15	105	22	36	17	22	1.94
363339--363374	14	2.6	14	90	0	54	30	0	22	47	1.52
363564--363651	20	4.4	20	91	2	142	18	20	25	36	1.95
365879--366055	89	2.0	88	98	1	345	29	25	13	31	1.94
367033--367095	20	3.2	20	93	0	108	23	19	28	28	1.98

Tables:   1   2   3