Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008246.1 Hibiscus syriacus cultivar Beakdansim tig00110896_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  500120

Tables:   1   2   3   

This is table  3  of  3  ( 304 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
367082--367212
20
6.6
20
94
0
226
19
19
19
41
1.91
367214--367256
21
2.0
21
95
0
77
41
9
23
25
1.84
371830--371901
25
2.9
24
76
12
65
48
0
1
50
1.09
373048--373081
12
2.8
12
86
0
50
41
0
0
58
0.98
374751--374795
3
14.7
3
86
4
63
71
0
2
26
0.98
375164--375236
20
3.7
20
96
0
128
38
20
20
20
1.94
375223--375329
20
5.3
20
91
0
160
31
26
18
23
1.97
375164--375330
40
4.2
40
78
11
139
34
23
19
23
1.97
375203--375330
60
2.1
60
84
2
168
32
24
18
24
1.97
376414--376449
14
2.5
14
90
4
54
58
22
13
5
1.56
378655--378723
20
3.5
20
92
4
113
36
26
21
15
1.94
378636--378790
34
4.4
33
79
15
125
40
21
23
15
1.91
379529--379598
20
3.5
20
88
3
106
50
22
15
11
1.76
379529--379632
19
5.6
19
79
14
119
48
23
18
10
1.79
379529--379632
39
2.9
36
84
8
133
48
23
18
10
1.79
379959--380024
22
3.0
22
84
0
78
24
13
36
25
1.92
380221--380273
20
2.7
20
96
0
97
18
20
22
37
1.94
380270--380315
21
2.2
21
88
0
65
39
17
26
17
1.91
381163--381208
21
2.1
22
84
4
58
54
2
0
43
1.12
381207--381248
21
2.0
21
85
0
57
66
7
0
26
1.17
387393--387431
18
2.1
18
85
4
51
17
5
33
43
1.72
387603--387627
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
388500--388534
17
2.1
17
88
0
52
14
0
2
82
0.77
392313--392364
22
2.4
22
83
3
70
50
0
3
46
1.20
394472--394527
21
2.5
23
77
8
62
23
5
1
69
1.18
398309--399695
106
13.3
106
92
2
2107
33
24
18
23
1.97
398523--398678
43
3.4
43
66
14
116
33
25
19
21
1.97
401423--401477
21
2.5
23
80
11
71
23
3
1
70
1.12
403918--403950
13
2.4
14
85
10
50
57
0
0
42
0.98
406393--406455
31
2.1
28
82
8
72
65
3
4
26
1.28
410470--410497
2
14.0
2
100
0
56
50
0
0
50
1.00
411493--411623
37
3.5
37
97
0
244
35
4
15
44
1.67
414107--414135
13
2.2
13
100
0
58
20
13
6
58
1.58
415009--415228
109
2.0
109
99
0
431
22
28
16
32
1.95
417027--417057
2
15.5
2
100
0
62
51
0
0
48
1.00
417510--417552
20
2.2
20
86
0
59
55
0
0
44
0.99
417644--417714
36
1.9
37
83
8
92
46
4
1
47
1.30
417709--417744
14
2.5
15
90
9
65
69
0
0
30
0.89
417686--417736
26
2.0
25
84
3
66
62
0
1
35
1.06
417784--417871
38
2.3
38
80
9
99
53
1
1
44
1.15
418376--418680
151
2.0
152
99
0
603
33
13
17
35
1.89
418892--418924
16
1.9
17
88
11
50
63
0
6
30
1.18
419191--419219
14
2.0
15
93
6
51
41
0
0
58
0.98
422940--422973
14
2.3
15
90
5
52
73
2
2
20
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
423615--423759
72
2.0
72
95
0
263
38
16
15
29
1.89
428930--428978
23
2.2
21
82
10
62
69
2
0
28
1.00
429259--429285
2
13.5
2
100
0
54
48
0
0
51
1.00
436857--436885
13
2.1
14
93
6
51
51
27
0
20
1.47
442997--443036
21
1.9
21
85
10
55
35
10
2
52
1.48
449426--449497
2
36.0
2
100
0
144
50
0
0
50
1.00
450072--450115
23
1.9
23
81
9
54
38
2
13
45
1.56
461637--461966
59
5.6
59
88
0
480
33
14
20
30
1.93
471447--471494
3
15.0
3
82
8
51
39
0
0
60
0.97
476823--476854
15
2.1
15
94
0
55
25
18
9
46
1.79
484179--484250
6
12.5
6
80
16
82
83
0
16
0
0.65
484185--484249
35
1.9
33
93
6
112
84
0
15
0
0.62
485106--485584
94
5.1
94
94
1
806
28
15
21
34
1.94
485595--485663
33
2.1
33
100
0
138
27
20
20
31
1.97
486006--486203
95
2.1
95
99
0
387
37
14
15
31
1.88
486537--487178
113
5.7
113
90
3
936
38
14
18
28
1.90
487521--487573
3
17.0
3
84
7
70
37
0
0
62
0.96
489705--489745
16
2.6
16
96
0
73
9
12
26
51
1.70
496478--496949
59
8.0
59
93
0
739
33
15
20
31
1.93
499820--499850
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1   2   3

The End!