genome.fa.s8268.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008268.1 Hibiscus syriacus cultivar Beakdansim tig00110925_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  492505

Tables:   1   2   3   

This is table  3  of  3  ( 298 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387863--387940	31	2.5	31	81	6	88	39	7	5	47	1.54
388000--388045	19	2.3	20	79	20	53	41	6	4	47	1.49
389673--389771	33	3.0	33	93	1	171	23	15	24	37	1.93
395352--395581	64	3.6	63	80	6	230	27	17	25	29	1.98
395480--395530	19	2.7	19	85	8	70	25	15	35	23	1.94
395374--395581	65	3.2	64	80	13	239	27	17	25	29	1.97
401984--402023	21	1.9	21	85	10	55	35	10	2	52	1.48
403951--404180	64	3.6	63	79	6	212	26	17	26	29	1.97
404079--404129	19	2.7	19	85	8	70	25	15	35	23	1.94
403973--404180	65	3.2	64	80	13	221	27	16	25	30	1.97
404784--404818	18	1.9	18	88	0	52	37	5	31	25	1.80
407018--407064	19	2.5	19	89	0	76	38	6	42	12	1.69
408213--408258	20	2.3	19	85	14	58	26	15	8	50	1.73
413294--413321	14	2.0	14	100	0	56	78	0	0	21	0.75
426865--426897	16	2.0	17	94	5	59	18	0	6	75	1.00
427713--427832	50	2.4	47	75	15	125	18	34	25	22	1.96
427959--427997	10	3.9	10	93	0	69	20	28	0	51	1.48
427955--428005	20	2.5	20	87	0	75	25	29	0	45	1.54
428047--428087	18	2.3	18	91	4	66	29	4	2	63	1.28
428157--428370	111	1.9	111	99	0	419	36	7	11	44	1.68
430408--430479	24	2.9	24	67	19	58	26	6	4	62	1.39
430509--430593	35	2.5	33	78	14	91	27	8	10	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433811--434258	182	2.5	182	92	1	722	28	15	12	43	1.84
434132--434703	111	5.1	112	92	1	880	26	14	13	45	1.82
434132--434703	223	2.6	223	91	1	887	26	14	13	45	1.82
435582--435649	3	22.7	3	100	0	136	67	0	0	32	0.91
436705--436743	20	1.9	21	89	5	62	17	12	35	33	1.88
437826--437955	30	4.3	30	78	5	118	57	11	13	16	1.65
437840--437955	60	1.9	61	84	5	155	58	11	13	16	1.63
439628--439678	3	17.3	3	84	11	70	66	1	0	31	1.03
439623--439659	18	2.1	18	94	0	65	70	5	0	24	1.08
439938--439970	9	3.7	9	91	0	57	39	9	15	36	1.79
441230--441268	20	2.0	20	85	10	53	28	12	7	51	1.67
444254--444288	18	1.9	18	94	0	61	28	31	14	25	1.95
445205--445364	21	7.6	21	80	0	113	19	46	7	26	1.76
445206--445381	42	4.2	42	84	1	219	19	46	6	26	1.75
445204--445381	63	2.8	63	75	3	180	19	46	7	26	1.76
445389--445449	18	3.2	18	71	13	50	19	36	8	36	1.82
454404--454441	2	19.0	2	100	0	76	50	0	0	50	1.00
455861--455901	13	3.1	13	89	3	64	24	34	14	26	1.94
462046--462133	27	3.3	27	86	0	122	13	47	9	29	1.74
462064--462149	27	3.2	27	85	3	84	10	47	10	31	1.72
463756--463786	13	2.4	13	100	0	62	12	6	32	48	1.67
464073--464240	39	4.3	39	87	1	230	17	30	21	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464072--464240	78	2.2	76	91	5	275	17	30	21	31	1.96
468600--468624	2	12.5	2	100	0	50	52	0	0	48	1.00
474163--474226	23	2.8	23	95	0	110	62	0	4	32	1.16
474396--474450	27	2.0	28	86	13	80	54	0	3	41	1.18
474399--474461	27	2.2	29	81	10	78	55	1	3	39	1.25
483664--483756	10	9.7	9	73	13	78	16	25	27	30	1.96
483663--483756	19	4.8	19	76	15	86	17	25	27	29	1.97
483664--483756	29	3.2	28	84	6	114	16	25	27	30	1.96
484678--484801	63	2.0	63	82	6	153	16	28	29	25	1.97
490977--491059	10	8.7	9	74	12	76	15	25	28	30	1.96
490976--491033	20	2.9	20	89	7	91	17	25	25	31	1.97
490997--491059	19	3.3	19	82	10	67	15	25	30	28	1.96
490996--491059	29	2.2	29	86	2	85	17	25	29	28	1.97
491975--492098	63	2.0	63	82	6	153	16	28	29	25	1.97

Tables:   1   2   3

The End!