genome.fa.s8274.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008274.1 Hibiscus syriacus cultivar Beakdansim tig00110931_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1661830

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 705 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201984--202016	16	2.1	16	100	0	66	57	24	12	6	1.57
202082--202135	16	3.4	16	84	0	81	59	20	9	11	1.59
202368--202406	11	3.5	11	86	6	60	23	28	20	28	1.99
202341--202406	23	2.8	24	83	2	80	28	25	21	24	1.99
203245--203285	14	2.9	14	88	0	64	58	14	12	14	1.63
203262--203308	24	2.0	24	91	0	76	55	19	12	12	1.69
203258--203310	14	4.1	14	74	18	51	52	20	15	11	1.72
205110--205202	46	2.0	45	97	2	177	36	18	15	30	1.91
208084--208142	18	3.2	19	79	13	70	32	0	0	67	0.91
212083--212142	21	2.9	21	82	0	75	30	31	16	21	1.96
212268--212320	21	2.5	21	81	0	70	28	30	18	22	1.98
212070--212428	178	2.0	178	98	0	691	32	27	15	23	1.95
216861--216889	2	14.5	2	100	0	58	51	48	0	0	1.00
222201--222362	79	2.1	79	92	0	270	37	14	19	29	1.91
226969--227021	22	2.4	22	90	0	88	52	5	22	18	1.66
232327--232353	2	13.5	2	100	0	54	51	0	0	48	1.00
243391--243425	2	17.5	2	100	0	70	0	51	0	48	1.00
245408--245452	18	2.5	18	81	0	54	31	33	0	35	1.58
253057--253206	75	2.0	75	97	0	282	35	16	10	37	1.84
254898--255009	21	5.3	21	67	16	79	38	20	17	23	1.93
254897--255031	42	3.2	42	94	0	225	37	20	17	24	1.94
254891--255036	21	6.9	20	68	17	73	36	19	18	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255073--255126	21	2.6	21	87	0	72	27	25	22	24	2.00
255135--255200	21	3.1	21	91	0	105	22	22	24	30	1.99
255135--255209	21	3.6	21	88	0	96	22	24	25	28	2.00
261484--261834	174	2.0	176	98	1	679	35	25	14	23	1.94
266695--266736	14	3.0	14	89	6	59	14	7	11	66	1.43
279050--279121	20	3.4	21	84	5	92	25	0	29	45	1.53
291432--291525	31	3.0	31	80	1	89	55	7	2	35	1.40
291448--291525	31	2.5	31	82	0	93	58	7	0	33	1.26
291955--292110	61	2.6	60	76	12	149	41	7	21	29	1.79
296789--296827	21	1.9	20	84	5	51	43	28	25	2	1.68
297795--297837	21	2.0	20	82	8	50	55	2	2	39	1.25
308001--308026	7	3.7	7	100	0	52	46	0	0	53	1.00
311236--311283	23	2.1	22	88	11	71	66	0	4	29	1.10
311939--311963	2	12.5	2	100	0	50	52	0	0	48	1.00
312244--312377	66	2.0	66	100	0	268	46	4	10	38	1.59
324676--324717	21	1.9	21	85	9	57	50	2	2	45	1.27
327955--328061	46	2.3	46	83	0	133	23	18	30	27	1.98
337730--337764	17	2.1	16	89	5	52	20	0	2	77	0.90
339212--339302	31	3.1	28	70	16	85	36	4	23	36	1.75
339210--339399	60	3.2	59	79	5	204	41	4	20	33	1.72
341681--341747	33	2.1	33	86	13	95	70	4	4	20	1.23
341849--341895	10	4.7	10	82	7	60	76	0	6	17	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343106--344137	84	12.4	84	80	5	1096	24	19	24	31	1.98
343168--344087	248	3.7	249	89	2	1361	24	19	24	30	1.98
345252--345472	81	2.5	88	74	20	212	32	18	17	31	1.94
345303--345495	94	2.1	92	85	7	257	32	17	16	34	1.92
348832--349112	140	2.0	140	95	3	449	34	20	17	26	1.95
349402--349479	9	8.3	9	74	23	56	73	2	1	23	1.03
349421--349477	16	3.3	17	76	11	62	73	3	1	21	1.07
349433--349549	60	2.0	58	80	9	130	74	4	6	14	1.18
349571--349623	21	2.5	21	81	6	72	75	0	7	16	1.02
350314--350380	35	2.0	35	94	5	120	19	23	8	47	1.77
358648--358692	18	2.6	18	89	6	67	42	0	28	28	1.56
358701--358781	33	2.5	33	89	0	126	27	4	27	40	1.76
359222--359752	215	2.4	218	85	8	713	34	27	12	25	1.92
359708--359788	38	2.2	38	90	2	128	39	38	9	12	1.76
359477--359989	241	2.1	243	84	10	664	37	28	11	22	1.89
374243--374317	29	2.6	29	85	2	98	36	16	14	33	1.89
375463--375507	21	2.1	21	87	0	63	31	28	24	15	1.96
377149--377189	13	3.5	13	75	25	54	21	26	26	24	2.00
377137--377202	22	3.0	22	97	0	123	21	27	27	24	1.99
380299--380343	21	2.1	21	87	0	63	31	28	24	15	1.96
381995--382035	13	3.5	13	75	25	54	21	26	26	24	2.00
381983--382048	22	3.0	22	97	0	123	21	27	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396728--396789	30	2.1	30	96	0	115	50	1	12	35	1.51
405554--405596	20	2.2	19	83	4	50	37	0	0	62	0.95
406891--406920	5	5.8	5	96	4	51	43	40	16	0	1.48
406955--406987	17	2.0	17	88	5	50	3	12	21	63	1.41
408537--408587	26	2.0	26	88	0	75	45	3	11	39	1.59
411074--411138	33	2.0	33	94	5	116	43	6	15	35	1.72
414879--414974	47	2.0	48	97	2	185	31	27	22	18	1.97
416462--417769	663	2.0	663	96	3	2429	33	12	15	37	1.86
419513--419614	48	2.1	49	98	1	197	17	21	12	48	1.81
426952--426989	16	2.3	17	86	4	51	63	2	0	34	1.09
429425--429499	21	3.3	21	72	22	62	61	6	5	26	1.43
429793--429912	60	2.0	59	88	6	179	42	24	7	25	1.80
438621--438690	29	2.4	30	85	9	99	30	4	2	62	1.28
438765--438815	26	2.0	26	84	0	66	45	3	0	50	1.20
453437--453534	20	4.9	20	94	0	169	24	26	10	38	1.87
455295--455763	234	2.0	235	99	0	931	28	22	22	27	1.99
462954--462980	14	1.9	14	100	0	54	14	40	7	37	1.74
464597--464684	20	4.3	20	74	7	79	42	25	13	19	1.88
464580--464684	40	2.6	41	80	10	119	42	23	14	19	1.87
464651--464717	19	3.4	19	85	4	71	40	20	7	31	1.80
464667--464760	19	4.9	19	75	10	84	38	18	8	35	1.81
465311--465362	24	2.2	24	96	0	95	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467711--467756	20	2.3	20	92	0	74	43	21	19	15	1.87
468251--468287	18	2.1	18	89	0	56	29	8	10	51	1.65
468243--468295	24	2.2	24	89	0	79	33	5	13	47	1.66
469861--469911	22	2.3	22	96	0	93	23	15	41	19	1.90
470025--470114	20	4.4	20	81	1	99	20	13	26	40	1.89
470025--470114	40	2.2	40	82	5	110	20	13	26	40	1.89
470025--470138	40	2.8	40	79	9	108	21	14	23	41	1.89
470025--470139	60	1.9	61	80	8	137	20	13	24	40	1.89
470134--470176	21	2.0	21	90	0	68	41	16	20	20	1.90
470184--470237	20	2.7	19	75	8	63	24	14	33	27	1.94
470764--470797	2	17.0	2	100	0	68	50	0	0	50	1.00
471919--471955	2	18.5	2	100	0	74	51	0	0	48	1.00
475005--475069	22	3.2	22	65	24	61	46	10	15	27	1.79
476499--476832	39	9.2	37	76	12	268	46	4	5	44	1.44
476508--476924	104	4.1	105	77	15	317	46	4	5	44	1.44
476798--476891	29	3.3	29	90	1	136	46	4	5	43	1.45
476817--476872	17	3.6	17	72	22	68	44	5	7	42	1.54
476909--476953	25	1.9	24	86	13	67	40	0	8	51	1.33
478198--478296	4	25.8	4	72	13	57	20	7	1	71	1.15
478195--478251	26	2.2	26	78	6	62	21	5	0	73	1.02
480552--480593	11	3.8	11	93	0	75	61	19	2	16	1.44
482542--482590	11	4.5	11	84	5	73	61	16	2	20	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482542--482590	21	2.3	22	89	3	73	61	16	2	20	1.44
490343--490407	34	1.9	33	84	12	87	23	13	16	46	1.83
491103--491258	60	2.6	59	79	8	163	33	25	5	36	1.78
491376--491535	60	2.7	60	84	1	185	40	4	21	33	1.73
491427--491560	60	2.2	60	82	0	151	41	4	19	34	1.72
494967--495005	21	1.9	20	84	5	51	10	2	17	69	1.28
497607--497656	18	2.5	21	78	18	54	44	2	2	52	1.24
497616--497654	20	1.9	21	85	15	55	46	0	2	51	1.14
497631--497661	15	2.0	16	93	6	55	38	0	6	54	1.26
502506--502635	66	2.0	66	86	3	181	20	22	20	36	1.95

Tables:   1   2   3   4   5   6