genome.fa.s8274.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008274.1 Hibiscus syriacus cultivar Beakdansim tig00110931_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1661830

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 705 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1461662--1461698	18	2.1	18	89	0	56	51	10	5	32	1.60
1461902--1461966	23	2.8	23	85	0	85	40	16	7	35	1.78
1462313--1462366	23	2.5	20	75	18	54	42	18	1	37	1.61
1462328--1462390	23	2.7	23	90	0	90	38	19	6	36	1.77
1461904--1462912	424	2.4	426	97	1	1924	38	13	8	39	1.74
1462738--1462791	23	2.5	20	75	18	54	42	18	1	37	1.61
1462753--1462815	23	2.7	23	90	0	90	38	19	6	36	1.77
1465355--1466204	184	4.7	184	96	1	1545	34	15	15	35	1.89
1465355--1466204	366	2.3	367	95	2	1543	34	15	15	35	1.89
1467647--1467727	3	27.0	3	73	5	65	23	35	6	34	1.80
1467683--1467739	12	4.6	12	77	16	53	19	36	10	33	1.86
1469157--1470550	197	7.1	198	92	5	2324	31	15	15	37	1.89
1469157--1470550	387	3.6	390	93	4	2304	31	15	15	37	1.89
1470632--1470668	17	2.2	17	95	0	65	56	10	2	29	1.47
1472367--1472428	32	1.9	33	83	3	81	25	43	1	29	1.64
1474498--1474553	23	2.4	23	82	5	60	28	8	14	48	1.74
1474855--1474892	20	1.9	19	94	5	67	13	15	13	57	1.65
1474964--1475399	221	2.0	222	89	5	670	38	7	8	44	1.63
1476787--1476857	30	2.3	31	82	2	81	46	0	8	45	1.33
1488594--1488632	2	19.0	2	94	5	69	48	0	2	48	1.15
1489808--1489920	56	2.0	56	96	3	210	30	8	19	41	1.82
1490972--1491042	22	3.4	22	73	11	85	18	19	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1490972--1491059	41	2.3	36	86	11	115	20	17	25	37	1.93
1491659--1491764	41	2.6	41	81	10	128	39	22	16	21	1.92
1491741--1491788	24	2.0	24	100	0	96	33	25	16	25	1.96
1491705--1491829	65	1.9	65	96	0	232	38	24	16	20	1.93
1491749--1491952	41	4.9	41	90	3	302	36	22	19	21	1.95
1492008--1492315	153	2.0	153	98	1	600	32	12	18	35	1.89
1493528--1493566	20	2.0	20	85	10	53	43	15	5	35	1.69
1494589--1494643	24	2.3	23	75	9	56	50	0	0	49	1.00
1494606--1494653	14	3.4	14	78	16	55	50	0	0	50	1.00
1496416--1496460	23	2.0	23	82	8	56	42	4	2	51	1.34
1496512--1496552	2	20.5	2	100	0	82	48	0	0	51	1.00
1498893--1498940	15	3.4	13	78	18	51	70	0	4	25	1.04
1503845--1503910	2	34.0	2	93	6	118	50	0	0	50	1.00
1505370--1505427	25	2.2	26	82	11	66	37	3	6	51	1.46
1510939--1511010	36	2.0	36	100	0	144	25	2	27	44	1.68
1514840--1514910	21	3.3	21	78	7	63	21	38	22	18	1.94
1519854--1519888	16	2.2	16	89	0	52	42	28	5	22	1.76
1551309--1551372	28	2.3	28	86	0	83	29	18	15	35	1.92
1555617--1555670	20	2.6	20	80	11	56	50	3	1	44	1.30
1555617--1555678	23	3.1	20	80	17	67	50	4	1	43	1.33
1566846--1566901	10	5.5	10	75	12	51	71	5	3	19	1.21
1566974--1567650	335	2.0	332	89	5	1028	43	7	4	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1579302--1579370	35	1.9	35	82	2	84	27	17	18	36	1.94
1581167--1581358	21	9.2	21	63	20	91	21	21	26	30	1.98
1581167--1581383	42	5.2	42	93	1	357	21	22	24	31	1.98
1581569--1581597	14	2.0	15	93	6	51	55	0	0	44	0.99
1587292--1587338	21	2.2	22	84	3	60	40	25	4	29	1.75
1593629--1593668	3	13.3	3	89	10	64	70	0	0	30	0.88
1593621--1593664	22	2.0	22	91	8	72	68	2	0	29	1.02
1593860--1594412	40	13.0	44	69	18	176	26	18	30	24	1.98
1593835--1594243	129	3.2	129	95	1	705	27	18	30	23	1.98
1594043--1594402	169	2.1	169	90	1	560	25	20	30	24	1.99
1593867--1594412	83	6.4	83	70	14	314	25	19	31	23	1.98
1593874--1594418	129	4.3	123	85	5	420	25	19	30	24	1.98
1594431--1594484	28	1.9	28	85	7	74	50	16	12	20	1.78
1594500--1594682	66	2.8	65	79	10	210	38	16	19	25	1.92
1594723--1594878	65	2.5	63	77	5	172	41	14	14	30	1.85
1594884--1594926	14	3.0	14	86	6	59	41	4	20	32	1.73
1594884--1594926	15	2.9	15	89	3	61	41	4	20	32	1.73
1595363--1595530	64	2.6	64	80	4	178	46	13	10	29	1.76
1595472--1595546	28	2.6	28	89	6	107	46	14	6	32	1.71
1595526--1595682	52	3.0	52	95	0	269	37	16	14	31	1.88
1595667--1595745	28	2.8	26	84	9	86	49	12	10	27	1.73
1595713--1595787	38	2.0	38	97	0	141	49	18	8	24	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1595754--1595825	27	2.6	27	88	4	99	43	15	9	31	1.79
1595691--1595814	65	1.9	64	88	8	189	47	16	9	25	1.77
1596082--1596185	36	3.0	36	80	4	115	35	12	20	31	1.90
1596083--1596201	36	3.4	36	78	6	111	36	13	21	29	1.91
1596153--1596385	105	2.3	101	83	9	267	36	12	19	31	1.89
1598026--1598086	11	5.4	11	83	14	70	3	14	9	72	1.24
1598026--1598097	24	3.0	24	84	12	94	2	18	9	69	1.28
1598028--1598097	22	2.9	24	83	12	90	2	18	10	68	1.30
1598717--1598787	20	3.0	24	69	22	78	40	11	23	23	1.87
1598704--1598778	20	3.5	20	70	20	62	37	10	25	26	1.89
1598714--1598793	26	3.3	26	68	20	82	42	10	23	23	1.84
1598702--1598795	46	2.1	45	91	2	152	38	9	25	26	1.87
1600628--1601043	210	2.0	210	85	0	564	24	22	21	31	1.98
1601222--1601283	32	2.0	32	96	3	117	61	9	14	14	1.57
1604349--1604392	20	2.4	19	85	11	56	2	9	4	84	0.85
1604991--1605030	3	13.3	3	89	10	64	70	0	0	30	0.88
1604983--1605026	22	2.0	22	91	8	72	68	2	0	29	1.02
1607394--1607541	60	2.5	62	81	10	166	43	4	19	31	1.72
1608094--1608149	21	2.6	21	71	20	53	44	3	3	48	1.37
1608693--1608761	27	2.5	27	81	9	77	39	4	10	46	1.58
1609203--1610973	4	449.5	4	95	3	3253	50	24	0	24	1.51
1610959--1611047	4	22.8	4	93	4	146	28	25	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1610971--1611047	23	3.3	23	98	1	145	25	25	24	23	2.00
1617017--1617043	2	13.5	2	100	0	54	51	0	0	48	1.00
1618148--1618371	112	2.0	112	100	0	448	28	19	17	33	1.95
1619930--1620121	60	3.2	59	77	12	160	33	20	4	41	1.71
1620657--1620702	18	2.4	20	82	7	60	41	0	2	56	1.11
1620657--1620714	20	2.8	20	77	17	57	43	0	1	55	1.10
1620664--1620726	30	2.1	30	82	5	74	36	3	1	58	1.23
1626027--1626076	23	2.2	23	82	13	59	44	8	2	46	1.44
1626414--1626467	22	2.5	20	80	16	63	46	0	1	51	1.11
1626543--1626570	14	2.0	14	100	0	56	42	14	0	42	1.45
1629606--1629633	11	2.5	11	100	0	56	50	35	0	14	1.43
1634802--1634835	11	3.1	11	100	0	68	47	8	0	44	1.34
1639209--1639242	18	1.9	18	88	5	52	32	0	2	64	1.08
1640605--1640656	24	2.2	24	82	0	59	48	21	11	19	1.80
1640621--1640703	12	6.8	13	64	15	52	37	22	16	22	1.94
1640621--1640708	24	3.7	24	85	8	117	36	21	18	23	1.95
1641783--1641842	27	2.2	27	100	0	120	28	11	10	50	1.71

Tables:   1   2   3   4   5   6

The End!