genome.fa.s8275.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008275.1 Hibiscus syriacus cultivar Beakdansim tig00110933_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1991061

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768497--768522	5	5.2	5	100	0	52	0	19	0	80	0.71
771380--771438	31	1.9	31	85	0	82	23	15	5	55	1.59
774489--774519	14	2.3	14	94	5	55	41	0	9	48	1.36
775509--775591	24	3.5	24	89	0	130	6	12	21	60	1.53
775501--775588	14	6.9	14	74	20	86	4	11	23	60	1.49
775566--775595	14	2.1	14	93	0	51	13	6	16	63	1.50
779223--779294	30	2.4	29	77	9	72	41	18	8	31	1.80
779604--779675	31	2.3	31	78	4	74	33	9	15	41	1.80
782413--782495	35	2.4	35	89	0	130	49	7	6	37	1.55
783803--783843	17	2.3	18	91	4	66	41	2	0	56	1.13
784075--784133	24	2.4	25	80	2	66	57	5	3	33	1.37
784356--784475	11	11.4	10	70	14	64	50	2	5	41	1.40
784356--784473	31	3.8	30	77	12	112	50	2	5	41	1.40
795174--795643	234	2.0	226	85	4	627	39	12	11	37	1.79
796836--797070	81	3.0	81	83	10	283	49	8	20	20	1.76
797598--797654	26	2.2	26	96	3	107	35	7	15	42	1.75
798140--798337	99	2.0	99	98	2	380	40	7	13	39	1.71
798568--800565	4	511.5	4	88	4	2845	25	3	25	45	1.70
801174--801231	22	2.7	22	94	2	100	36	32	6	24	1.82
809549--809579	2	16.0	2	93	6	55	48	0	0	51	1.00
813087--813164	21	3.8	20	80	9	77	21	24	16	37	1.94
813087--813174	20	4.3	20	74	16	72	23	23	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
814037--814090	24	2.2	24	90	0	81	22	16	20	40	1.91
814455--814532	20	3.8	20	84	3	102	21	19	16	42	1.89
814435--814531	41	2.4	41	84	1	133	23	19	17	39	1.92
816390--816433	22	2.0	21	83	12	54	25	0	2	72	0.96
820815--820865	21	2.5	21	87	9	70	68	0	0	31	0.90
820963--820996	17	2.0	17	94	0	59	35	0	2	61	1.11
826212--826305	40	2.3	41	78	14	113	38	10	12	38	1.78
826606--826646	13	3.0	14	82	17	59	7	9	21	60	1.52
826643--826678	17	2.1	18	94	5	65	52	11	11	25	1.69
832224--832311	31	2.8	30	81	6	95	43	5	5	45	1.51
832733--832794	21	3.0	21	78	4	72	20	24	17	37	1.94
832735--832795	20	3.0	21	78	4	70	22	24	18	34	1.96
832828--832867	21	1.9	21	89	0	62	27	25	20	27	1.99
834669--834744	26	3.0	24	75	11	71	53	2	2	40	1.28
835175--835207	9	3.5	10	88	12	52	30	0	0	69	0.88
835175--835210	16	2.2	16	90	9	56	30	0	0	69	0.89
836123--836170	18	2.6	19	78	18	57	56	4	0	39	1.19
836560--836619	27	2.2	28	96	3	113	40	18	6	35	1.77
840337--840362	13	2.0	13	100	0	52	46	0	7	46	1.31
843140--843183	3	14.7	3	81	9	54	4	31	2	61	1.28
843620--843714	12	7.9	12	80	9	86	48	1	47	3	1.24
843641--843717	15	4.9	15	74	12	66	50	0	46	2	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
843666--843718	6	9.3	6	84	12	76	49	0	49	1	1.12
843638--843708	21	3.2	21	80	6	79	49	0	47	2	1.16
844300--844348	24	2.0	24	100	0	98	51	12	24	12	1.73
844891--844951	21	2.9	21	95	4	106	11	9	40	37	1.75
845086--845142	21	2.7	21	97	0	105	17	21	40	21	1.92
856464--856488	6	4.2	6	100	0	50	32	32	16	20	1.94
862023--862076	26	2.1	26	100	0	108	27	29	18	24	1.98
870217--870277	24	2.5	24	84	5	79	13	8	14	63	1.50
887924--888174	126	2.0	124	92	7	420	41	10	10	38	1.74
889987--890020	13	2.7	13	95	4	61	73	0	0	26	0.83
889988--890027	13	3.2	13	80	19	50	70	0	0	30	0.88
890074--890118	19	2.4	18	81	7	54	37	15	0	46	1.46
890953--891075	65	1.9	64	91	5	203	39	16	8	35	1.80
891505--891540	18	1.9	19	88	5	56	52	2	5	38	1.39
894702--894737	2	18.0	2	100	0	72	50	0	0	50	1.00
895934--896033	19	5.2	19	72	7	76	32	8	14	46	1.73
895906--895964	29	2.0	29	86	0	82	35	5	11	47	1.62
896114--896168	27	2.1	25	83	6	65	34	1	14	49	1.54
897036--897071	15	2.3	16	85	9	56	25	16	19	38	1.92
898838--898975	43	3.2	43	85	1	195	19	19	18	42	1.90
898838--899035	86	2.3	86	80	6	206	23	19	16	40	1.91
899471--899526	28	2.0	28	92	0	94	28	21	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901817--901935	41	3.0	40	67	15	100	43	15	9	31	1.79
901808--902034	85	2.7	81	81	6	222	42	16	11	29	1.82
902641--902718	3	25.7	3	92	2	129	34	2	0	62	1.09
902790--902838	25	2.0	25	84	8	64	40	30	16	12	1.85
910203--910799	299	2.0	294	93	5	1026	35	18	21	24	1.96
913570--913694	62	2.0	63	98	1	243	36	11	20	32	1.88
915539--915611	7	10.3	7	73	19	62	83	0	15	1	0.71
915545--915612	10	6.7	10	78	8	66	82	0	16	1	0.75
915539--915612	11	6.5	11	75	14	62	82	0	16	1	0.74
915540--915612	30	2.4	30	84	9	85	82	0	16	1	0.75
915536--915611	26	2.9	25	80	9	73	82	0	15	1	0.73
915542--915609	19	3.6	19	78	9	77	82	0	16	1	0.75
915940--915985	18	2.6	17	76	6	56	36	4	4	54	1.40
915940--915985	19	2.6	18	76	10	51	36	4	4	54	1.40
916756--917206	83	5.5	83	97	1	842	28	14	20	36	1.93
917940--918354	113	3.6	114	86	6	556	36	12	20	29	1.90
918687--918782	3	32.7	3	85	8	126	33	4	0	62	1.14
918687--918782	35	2.8	35	84	13	137	33	4	0	62	1.14
920123--920159	17	2.1	19	90	10	60	24	0	5	70	1.08
921482--921554	35	2.0	37	94	5	132	16	13	28	41	1.87
921649--921700	23	2.2	24	82	3	61	50	1	5	42	1.37
921779--921830	23	2.3	23	86	0	77	5	53	5	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924250--924282	15	2.2	15	100	0	66	6	12	69	12	1.35
930387--930411	2	12.5	2	100	0	50	48	0	0	52	1.00
934671--934706	2	18.0	2	100	0	72	50	0	0	50	1.00
937410--937435	2	13.0	2	100	0	52	50	0	0	50	1.00
941523--941605	31	2.8	30	64	12	71	36	16	12	34	1.86
942942--943050	31	3.5	32	79	3	114	33	6	13	46	1.69
942964--943075	31	3.6	31	79	10	115	35	9	10	43	1.73
951248--951423	27	6.1	28	81	12	214	48	27	8	14	1.73
951252--951402	59	2.6	60	89	3	236	47	30	7	14	1.73
951248--951423	59	3.1	55	81	13	203	48	27	8	14	1.73
952241--952786	79	6.9	79	87	0	763	24	15	23	36	1.93
952241--952786	237	2.3	237	90	1	846	24	15	23	36	1.93
955319--955384	30	2.2	30	97	2	125	13	24	28	33	1.93
957520--958243	229	3.2	230	87	6	1062	29	11	23	35	1.90
958855--958924	24	2.9	24	80	0	86	45	17	10	27	1.80
959621--959688	29	2.3	29	82	0	82	39	25	4	30	1.75
959724--959774	23	2.3	23	93	3	86	9	23	49	17	1.77
959741--959785	18	2.6	18	96	3	83	8	22	51	17	1.73
959719--959769	13	4.2	13	78	19	65	13	23	45	17	1.84
959790--959838	9	5.1	9	85	9	62	36	28	22	12	1.90
959793--959824	11	3.1	11	91	8	50	34	28	28	9	1.88
959790--959838	20	2.6	18	81	15	62	36	28	22	12	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959807--959845	19	2.0	20	85	5	53	38	20	23	17	1.93
966025--966083	24	2.5	24	80	0	73	49	15	10	25	1.76
966774--966847	28	2.6	28	79	12	78	41	22	5	29	1.76
966876--966905	13	2.3	13	94	0	51	16	23	43	16	1.87
966882--966923	18	2.4	18	96	4	77	11	23	47	16	1.80
966926--966960	10	3.6	10	84	7	54	34	28	22	14	1.93
968264--968535	83	3.3	79	76	15	227	36	4	6	52	1.48
970411--970445	15	2.2	16	90	5	54	62	20	5	11	1.48
973454--973520	32	2.1	32	94	0	116	41	13	22	22	1.88
986300--986342	20	2.1	21	83	12	54	46	2	0	51	1.13

Tables:   1   2   3   4   5   6   7   8