genome.fa.s8275.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008275.1 Hibiscus syriacus cultivar Beakdansim tig00110933_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1991061

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786704--1786755	21	2.5	21	81	3	61	36	19	26	17	1.94
1786786--1786838	20	2.7	20	93	0	88	24	28	20	26	1.99
1787398--1787576	19	10.1	19	72	19	145	11	24	20	43	1.85
1787398--1787514	52	2.2	52	95	0	207	11	23	22	43	1.84
1787453--1787551	33	3.0	33	95	1	171	11	25	23	40	1.87
1787472--1787527	14	3.6	14	74	21	58	10	25	25	39	1.87
1789657--1789832	42	4.2	42	79	0	199	20	36	17	25	1.94
1789712--1789862	21	7.2	21	64	5	63	21	36	19	22	1.95
1789657--1789832	84	2.1	84	96	0	325	20	36	17	25	1.94
1789657--1789862	42	4.9	41	73	10	157	21	35	18	24	1.95
1789657--1789862	84	2.5	84	90	1	270	21	35	18	24	1.95
1791218--1791253	14	2.6	14	95	0	63	30	0	25	44	1.54
1791362--1791428	19	3.8	19	77	18	81	44	20	22	11	1.84
1791433--1791486	19	2.8	19	82	2	63	16	20	24	38	1.92
1793758--1793782	12	2.1	12	100	0	50	0	28	0	72	0.86
1793957--1794010	24	2.2	24	90	0	81	40	20	16	22	1.91
1794795--1794846	21	2.5	21	87	3	70	38	17	23	21	1.93
1794835--1794908	20	3.7	20	75	10	69	36	22	18	21	1.95
1794832--1794923	41	2.3	40	84	1	121	40	21	16	21	1.91
1794855--1794922	20	3.3	20	77	2	73	41	22	16	20	1.90
1795136--1795203	20	3.4	20	66	8	57	42	23	17	16	1.88
1795235--1795288	14	3.5	14	77	22	63	11	20	20	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1795217--1795287	33	2.2	33	84	0	88	19	19	21	39	1.93
1795415--1795451	14	2.6	14	86	0	56	48	21	0	29	1.50
1797319--1797386	20	3.5	19	82	6	82	38	23	23	14	1.92
1797375--1797465	14	5.9	14	74	20	83	48	23	17	10	1.79
1797359--1797470	33	3.4	33	97	1	208	47	22	18	11	1.81
1797359--1797481	65	1.9	66	91	5	205	47	23	17	11	1.80
1797499--1797538	14	2.9	14	100	0	80	7	15	27	50	1.70
1797539--1797582	20	2.2	20	88	4	63	18	25	20	36	1.95
1799439--1799512	20	3.8	20	81	1	69	43	22	17	16	1.88
1799746--1799789	22	2.0	22	90	0	70	20	15	43	20	1.88
1799957--1800091	20	6.7	20	80	7	121	24	17	24	33	1.96
1799957--1800094	61	2.3	61	85	0	195	23	17	23	34	1.96
1799957--1800112	61	2.6	61	79	6	145	23	19	23	33	1.97
1800633--1800750	6	19.8	6	84	1	121	22	0	8	68	1.16
1800633--1800750	9	13.2	9	85	0	121	22	0	8	68	1.16
1800644--1800750	24	4.5	24	91	0	142	22	0	8	69	1.15
1807495--1807575	30	2.6	30	92	3	135	30	16	18	34	1.93
1808542--1808580	2	19.5	2	100	0	78	51	0	0	48	1.00
1809319--1809364	25	2.0	23	87	12	67	41	6	0	52	1.27
1811366--1811426	23	2.7	22	85	5	86	22	13	8	55	1.64
1811366--1811432	22	3.0	22	82	4	89	20	13	8	56	1.64
1811810--1811848	20	2.0	20	84	0	51	41	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812237--1812261	13	1.9	13	100	0	50	40	0	0	60	0.97
1816927--1816990	14	4.5	14	76	3	56	28	31	20	20	1.97
1820488--1820542	23	2.4	23	96	3	103	12	14	9	63	1.51
1821372--1821446	38	2.0	38	91	0	123	22	9	26	41	1.84
1822100--1822146	21	2.2	21	88	0	67	10	29	36	23	1.89
1822117--1822157	21	2.0	21	90	0	64	12	31	36	19	1.89
1825038--1825070	12	2.8	12	100	0	66	27	24	9	39	1.85
1827543--1827582	21	1.9	21	94	0	71	37	15	27	20	1.92
1827558--1828657	299	3.7	304	82	5	1283	27	16	18	37	1.92
1827314--1828657	611	2.2	604	83	4	1650	28	16	17	37	1.91
1839425--1839458	14	2.4	14	100	0	68	35	20	14	29	1.93
1843244--1843304	31	2.0	31	93	6	108	47	9	13	29	1.74
1846885--1847331	223	2.0	223	96	3	828	29	27	16	25	1.97
1862985--1863064	40	2.0	40	90	0	124	36	13	18	31	1.90
1864653--1864682	2	15.0	2	100	0	60	50	0	0	50	1.00
1872670--1872714	18	2.3	20	81	7	58	37	0	0	62	0.96
1876864--1876888	3	8.3	3	100	0	50	0	36	0	64	0.94
1878227--1878261	18	1.9	18	100	0	70	42	0	0	57	0.99
1880356--1880436	40	2.0	40	92	0	135	23	12	18	45	1.83
1882133--1882184	2	26.0	2	100	0	104	50	0	0	50	1.00
1890266--1890350	6	14.2	6	96	0	143	17	29	32	20	1.95
1903231--1903263	15	2.1	16	88	5	50	21	15	27	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916403--1916544	70	2.0	70	98	0	275	33	12	19	34	1.89
1919216--1919273	28	2.0	29	83	9	75	56	12	0	31	1.35
1919232--1919271	21	1.9	21	90	10	64	60	12	0	27	1.33
1927139--1927188	2	25.5	2	83	4	66	52	2	2	44	1.24
1929927--1930021	2	47.5	2	90	4	138	51	1	3	44	1.24
1930788--1930870	12	6.9	12	70	10	53	54	1	3	40	1.26
1930772--1930849	36	2.1	38	85	4	106	57	2	3	35	1.30
1931014--1931040	13	2.1	13	100	0	54	25	0	37	37	1.57
1935848--1935884	2	18.5	2	100	0	74	51	0	0	48	1.00
1937646--1937672	14	1.9	14	100	0	54	7	14	51	25	1.68
1942853--1943835	127	7.7	127	93	0	1619	22	22	21	32	1.98
1943976--1944025	23	2.2	23	82	7	57	52	0	16	32	1.44
1944248--1944345	34	2.9	34	87	0	151	38	3	5	53	1.39
1944870--1944938	21	3.3	20	86	6	84	23	24	33	18	1.97
1944916--1945013	42	2.3	42	80	0	106	24	17	36	21	1.94
1946566--1946623	24	2.5	23	83	8	64	62	5	0	32	1.18
1946720--1946815	30	3.3	30	81	5	90	59	0	0	40	0.97
1947373--1947414	21	2.0	21	85	0	57	47	7	0	45	1.30
1950204--1950233	3	10.0	3	100	0	60	66	33	0	0	0.92
1951741--1951811	31	2.2	32	82	2	90	30	19	12	36	1.89
1952736--1952762	6	4.5	6	100	0	54	33	0	14	51	1.43
1953769--1953828	27	2.2	27	84	0	75	38	36	5	20	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1961536--1961671	72	1.9	71	82	5	170	32	16	16	34	1.92
1963220--1963263	17	2.7	15	80	19	52	36	4	0	59	1.18
1965931--1965980	23	2.2	24	89	10	79	62	0	4	34	1.14
1970580--1970625	12	3.6	12	81	16	56	45	17	19	17	1.85
1970586--1970626	12	3.1	13	80	19	57	46	14	17	21	1.84
1972918--1972957	21	1.9	21	94	0	71	30	15	7	47	1.72
1972952--1973050	33	3.0	33	94	1	164	32	7	15	45	1.73
1973036--1973090	13	4.2	13	75	13	58	34	3	12	49	1.59
1973486--1973541	15	3.6	15	79	9	67	32	12	12	42	1.80
1973505--1973538	18	1.9	18	94	5	61	38	11	11	38	1.79
1974702--1974748	25	2.0	22	88	12	67	55	2	0	42	1.12
1976235--1976273	18	2.2	18	85	0	51	56	12	5	25	1.57
1981648--1981817	85	2.0	85	97	0	322	34	8	23	33	1.85
1983989--1984015	2	13.5	2	100	0	54	48	0	0	51	1.00
1984156--1984205	22	2.3	22	85	0	64	26	26	22	26	2.00
1984482--1984515	17	2.0	17	100	0	68	29	23	17	29	1.97

Tables:   1   2   3   4   5   6   7   8

The End!