Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008284.1 Hibiscus syriacus cultivar Beakdansim tig00110946_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  665325

Tables:   1   2   3   4   

This is table  4  of  4  ( 423 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
588653--589011
63
5.6
62
70
12
194
28
16
12
41
1.85
589162--589236
35
2.1
36
85
7
100
37
18
10
33
1.86
589211--589349
66
2.1
65
80
5
154
28
21
13
36
1.92
589630--589868
46
5.5
45
72
15
180
26
29
20
24
1.99
589573--589907
129
2.6
129
91
1
523
25
30
19
24
1.98
589580--589819
43
5.7
41
72
11
159
25
32
19
22
1.98
590123--590164
3
14.0
3
85
9
59
30
0
2
66
1.04
590123--590160
16
2.4
16
86
4
60
28
0
2
68
1.03
590127--590175
22
2.2
22
82
7
55
34
2
2
61
1.19
594002--594077
32
2.4
31
82
4
89
36
0
1
61
1.04
593969--594048
34
2.3
33
81
12
90
30
0
5
65
1.14
595797--595843
21
2.3
21
85
3
60
25
40
12
21
1.89
595847--595940
21
4.5
21
90
5
120
18
34
26
21
1.96
596463--596559
33
2.9
34
85
3
133
55
4
3
37
1.35
596461--596566
34
3.2
33
82
8
133
54
4
2
37
1.36
596947--597550
126
4.8
126
98
0
1183
31
20
26
21
1.98
596947--597550
251
2.4
252
98
0
1183
31
20
26
21
1.98
597618--597666
8
6.2
8
85
4
73
36
28
0
34
1.58
597619--597664
15
2.9
16
83
6
58
39
28
0
32
1.57
600662--600701
13
3.2
12
92
7
62
40
0
0
60
0.97
612305--612356
22
2.2
24
86
6
72
3
7
23
65
1.35
614144--614212
23
3.0
23
84
0
84
26
23
27
23
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
614228--614543
103
3.1
103
96
0
578
36
23
13
26
1.92
620571--620762
20
9.5
20
68
9
59
33
11
25
29
1.92
620551--620658
40
2.7
40
79
0
117
33
11
25
30
1.90
620683--620786
20
5.1
20
70
16
70
30
10
26
31
1.90
630330--630510
60
3.0
60
89
3
267
38
6
27
28
1.82
630330--630420
31
3.1
30
72
17
91
36
4
29
29
1.77
632773--632808
18
2.1
17
89
5
54
36
2
11
50
1.53
636472--636587
31
3.8
30
77
16
123
58
2
3
35
1.29
636542--636591
25
2.0
25
84
7
66
58
2
6
34
1.34
636411--636601
30
6.4
30
74
14
137
56
1
4
38
1.28
636412--636819
30
13.6
30
68
19
110
52
1
7
37
1.42
636842--636884
18
2.4
18
88
0
68
39
2
16
41
1.61
637173--637220
23
2.1
23
84
0
60
35
10
18
35
1.85
637424--637490
30
2.2
29
82
10
73
43
0
4
52
1.21
637645--637707
23
2.7
23
92
0
99
38
20
4
36
1.74
638073--638135
23
2.7
23
92
0
99
38
20
4
36
1.74
637287--638345
427
2.5
432
96
3
1978
38
12
7
41
1.72
637287--638362
428
2.5
424
92
5
1855
39
12
7
40
1.72
638548--638633
39
2.2
39
93
0
145
18
13
18
48
1.80
638890--638926
18
2.1
18
89
0
56
51
10
5
32
1.60
639355--639408
23
2.3
23
93
0
90
40
16
5
37
1.72
641885--642508
183
3.4
183
95
0
1101
33
16
13
36
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
642562--642600
11
3.6
11
79
6
53
25
2
12
58
1.47
642561--642602
21
2.0
21
95
0
75
28
4
11
54
1.57
643969--644043
3
25.0
3
73
0
60
22
34
6
36
1.81
643973--644055
12
6.9
12
83
0
94
20
34
8
36
1.83
643977--644055
36
2.2
36
90
0
122
20
35
8
35
1.84
643997--644058
18
3.4
18
79
0
79
17
35
9
37
1.83
643973--644058
6
14.3
6
77
0
64
19
34
8
37
1.82
645510--646559
194
5.5
196
88
7
1606
32
16
14
36
1.90
645750--646559
174
4.3
187
93
5
1134
31
16
15
36
1.90
645894--646559
196
3.4
197
97
1
1252
32
16
15
35
1.90
646683--646731
19
2.6
19
90
6
73
55
10
4
30
1.52
648511--648571
32
1.9
32
89
0
95
22
47
0
29
1.52
648605--648669
21
3.1
21
80
6
69
15
29
15
40
1.88
650875--650917
20
2.3
18
85
14
61
20
16
11
51
1.75
650880--650926
20
2.4
19
82
10
67
19
17
10
53
1.72
661137--661178
9
4.8
9
79
5
50
47
0
0
52
1.00
661140--661178
17
2.2
17
90
4
60
51
0
0
48
1.00
661137--661176
8
4.8
8
84
9
53
47
0
0
52
1.00
661790--661847
20
2.7
20
86
10
71
27
22
18
31
1.97

Tables:   1   2   3   4

The End!