Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008289.1 Hibiscus syriacus cultivar Beakdansim tig00110952_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  518235

Tables:   1   2   

This is table  2  of  2  ( 149 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
422915--422974
30
2.0
31
86
3
86
28
8
10
53
1.63
423437--423480
10
4.1
10
80
13
52
29
6
45
18
1.75
423835--423890
20
2.8
20
91
2
87
37
14
7
41
1.73
425058--425111
24
2.3
23
81
9
65
61
14
16
7
1.55
440156--440216
17
3.5
17
80
8
61
40
13
11
34
1.80
442855--442897
23
1.9
21
81
13
50
34
13
18
32
1.90
448909--448960
8
6.5
8
89
8
79
78
0
21
0
0.74
448888--448961
16
4.4
16
79
17
71
77
1
20
1
0.92
448880--448961
24
3.2
24
80
18
78
78
1
19
1
0.89
454165--454190
11
2.4
11
100
0
52
57
19
15
7
1.62
462398--462435
5
7.6
5
91
8
60
0
18
0
81
0.69
462398--462445
15
3.2
15
80
16
55
0
20
0
79
0.74
462445--462493
23
2.2
23
81
3
55
14
10
18
57
1.65
468237--468268
16
2.0
16
100
0
64
37
25
6
31
1.81
468367--468404
11
3.4
11
89
7
58
0
18
0
81
0.69
475196--475242
20
2.3
20
88
0
67
6
4
14
74
1.17
475213--475258
10
4.6
10
78
10
58
0
2
13
84
0.71
475206--475247
20
2.1
20
100
0
84
0
4
14
80
0.86
489913--489939
10
2.7
10
100
0
54
0
11
0
88
0.50
489908--489939
14
2.3
15
84
15
50
0
15
0
84
0.63
492261--492300
19
2.0
20
85
4
55
65
0
12
22
1.26
492713--492763
19
2.6
20
90
3
77
43
5
15
35
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
498272--498325
24
2.2
24
96
0
99
24
29
22
24
1.99
499688--499741
25
2.0
26
86
13
74
81
3
14
0
0.82
499699--499741
23
1.9
22
86
13
61
83
2
13
0
0.74
499691--499730
15
2.7
15
84
0
53
82
2
15
0
0.77
502748--502799
15
3.4
15
75
15
52
15
17
0
67
1.24
505941--506020
35
2.2
37
91
4
128
31
37
3
27
1.74
510884--512572
845
2.0
845
97
0
3189
28
21
12
38
1.89

Tables:   1   2

The End!