genome.fa.s8293.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008293.1 Hibiscus syriacus cultivar Beakdansim tig00110957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338481

Tables:   1   2   3   

This is table  1  of  3  ( 248 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3111--3152	8	4.9	9	80	8	52	33	0	2	64	1.07
3096--3136	18	2.3	18	87	4	57	39	0	0	60	0.96
3110--3152	17	2.5	17	81	7	52	32	0	2	65	1.06
4686--4724	17	2.2	18	86	13	55	58	2	5	33	1.33
7856--7898	21	2.1	20	83	12	52	34	16	25	23	1.95
9020--9490	179	2.6	178	88	4	671	42	14	15	28	1.86
11652--11716	21	3.1	21	93	0	112	43	10	32	13	1.79
11761--11826	33	2.0	33	87	0	96	33	0	43	22	1.54
17083--17152	34	2.1	32	84	5	86	24	27	14	34	1.94
17816--18459	200	3.2	200	86	2	918	37	15	16	30	1.90
19623--19666	21	2.1	21	86	0	61	29	27	27	15	1.96
19692--19736	22	2.0	22	86	4	63	31	33	26	8	1.87
20897--20932	18	2.0	18	100	0	72	11	22	33	33	1.89
21018--21053	18	2.0	18	94	0	63	11	19	33	36	1.87
20895--21078	62	3.1	57	66	21	142	21	14	26	36	1.92
20895--21145	121	2.1	121	96	0	457	23	14	25	36	1.93
21164--21224	23	2.7	23	86	0	86	21	26	26	26	1.99
21155--21232	23	3.3	23	80	1	75	24	20	21	33	1.97
24330--24588	127	2.0	128	87	0	367	42	13	13	30	1.82
24457--25216	200	3.8	200	89	1	1119	37	12	15	34	1.85
28422--29119	198	3.5	198	83	5	785	40	14	14	30	1.86
29134--29257	64	2.0	63	90	1	194	35	10	12	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30005--30042	5	7.6	5	96	0	67	23	42	18	15	1.89
32979--33023	22	2.0	22	95	0	81	26	8	22	42	1.83
34897--34942	22	2.1	21	84	11	58	41	0	0	58	0.98
38057--38228	84	2.0	84	97	0	326	43	12	15	29	1.83
38440--38497	22	2.6	21	81	10	62	27	3	0	68	1.05
38450--38504	22	2.8	19	77	17	58	29	1	0	69	0.99
39242--39300	16	3.7	16	95	0	100	37	6	18	37	1.78
39380--39442	23	2.7	23	87	0	90	28	15	19	36	1.92
46959--47099	3	46.7	3	88	1	210	36	0	1	61	1.05
47492--47533	17	2.3	19	76	16	52	71	9	19	0	1.13
47793--47821	13	2.2	13	100	0	58	0	31	62	6	1.22
48375--48412	12	3.2	12	81	3	51	28	2	2	65	1.19
53922--53955	17	1.9	17	94	5	59	82	0	17	0	0.67
56047--56492	185	2.4	185	89	1	680	28	13	22	36	1.91
56047--56514	93	5.1	92	92	2	679	28	12	22	36	1.91
59844--60791	76	12.5	76	97	0	1765	21	20	21	35	1.96
60917--61073	3	51.7	3	88	2	215	37	0	1	61	1.04
61765--61793	13	2.2	13	100	0	58	0	31	62	6	1.22
62347--62384	12	3.2	12	81	3	51	28	2	2	65	1.19
67831--67870	20	2.0	21	90	5	64	60	5	27	7	1.45
72024--72068	21	2.1	21	87	0	63	31	28	24	15	1.96
72457--72496	16	2.4	17	83	4	55	22	5	25	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73564--73657	30	3.1	30	93	3	154	20	22	26	30	1.98
76709--76753	21	2.1	21	87	0	63	31	28	24	15	1.96
77144--77183	16	2.4	17	83	4	55	22	5	25	47	1.71
77556--77626	2	35.5	2	100	0	142	50	0	0	49	1.00
78307--78400	30	3.1	30	92	3	145	21	22	25	30	1.98
94409--94642	103	2.3	103	89	3	364	27	12	22	38	1.90
99984--100219	105	2.3	105	90	2	372	27	12	22	36	1.91
100210--100287	23	3.3	23	81	1	93	24	20	23	32	1.98
103976--104039	32	2.0	32	100	0	128	25	12	12	50	1.75
112616--112667	24	2.2	24	82	0	59	11	15	25	48	1.78
112637--112667	14	2.2	14	94	0	53	9	12	22	54	1.67
112626--112674	24	2.0	24	96	0	89	10	14	22	53	1.71
113415--113489	10	7.7	10	69	21	61	9	12	21	57	1.62
113421--113485	16	4.1	16	95	0	121	7	12	23	56	1.61
113555--113587	16	2.1	16	100	0	66	6	12	24	57	1.57
114793--114868	31	2.4	31	80	2	89	27	31	26	14	1.95
114745--114868	63	2.0	63	82	9	155	26	29	27	16	1.97
115750--115809	17	3.4	17	80	8	75	13	23	45	18	1.84
115757--115806	19	2.5	19	90	9	73	8	22	50	20	1.74
115780--115807	14	2.0	14	100	0	56	7	21	50	21	1.72
115803--115873	19	3.7	19	88	3	88	26	26	25	21	1.99
115803--115872	9	7.3	9	70	12	50	27	27	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115822--115874	20	2.7	20	91	2	81	28	22	24	24	2.00
122115--122190	31	2.4	31	80	2	89	27	31	26	14	1.95
122067--122190	63	2.0	63	82	9	155	26	29	27	16	1.97
123073--123132	17	3.4	17	80	8	75	13	23	45	18	1.84
123080--123129	19	2.5	19	90	9	73	8	22	50	20	1.74
123103--123130	14	2.0	14	100	0	56	7	21	50	21	1.72
123126--123196	19	3.7	19	88	3	88	26	26	25	21	1.99
123126--123195	9	7.3	9	70	12	50	27	27	25	20	1.99
123145--123197	20	2.7	20	91	2	81	28	22	24	24	2.00
124922--124985	27	2.3	27	89	2	92	28	1	20	50	1.58
125159--125197	11	3.6	11	89	6	62	35	15	0	48	1.45
125161--125195	10	3.4	10	92	7	61	34	14	0	51	1.42
130894--130933	22	1.9	21	85	10	55	15	22	40	22	1.91
131548--131593	15	2.9	15	81	15	56	54	21	0	23	1.45
133066--133114	2	24.5	2	100	0	98	51	0	0	48	1.00
133564--133628	21	2.9	22	81	6	69	16	24	35	23	1.95
140089--140285	94	2.1	94	99	0	385	22	22	19	35	1.96
145158--146410	628	2.0	628	97	0	2391	33	13	21	31	1.92
152338--152695	110	3.3	108	80	7	361	30	22	17	29	1.96
152337--152597	55	4.7	55	82	7	298	29	22	17	30	1.97
152356--152695	55	6.3	55	80	7	250	31	21	17	29	1.96
152337--152641	165	1.8	165	83	2	407	30	22	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152538--152705	51	3.2	51	80	5	187	32	22	14	30	1.94
154086--154216	40	3.3	39	77	10	115	8	13	0	77	1.04
154064--154178	51	2.3	50	82	14	132	8	13	0	77	1.04
154125--154232	32	3.3	31	82	10	126	10	13	0	75	1.03
154141--154219	9	10.0	7	83	14	61	7	13	0	78	0.95
154117--154232	41	2.8	41	84	9	137	9	13	0	76	1.01
155865--155964	24	4.2	24	74	5	94	47	17	14	22	1.82
155858--155966	48	2.3	48	77	0	119	48	16	13	21	1.80
158454--158492	7	5.4	7	93	6	69	25	28	33	12	1.93
158454--158508	15	3.9	15	90	6	80	21	27	36	14	1.93
158490--158566	18	4.6	18	81	15	110	11	20	50	16	1.76
158484--158562	31	2.5	31	95	0	149	13	21	48	16	1.81
158469--158544	13	5.3	13	77	17	71	17	22	44	15	1.86
160698--160797	24	4.2	24	74	5	94	47	17	14	22	1.82
160691--160799	48	2.3	48	77	0	119	48	16	13	21	1.80
163286--163317	7	4.4	7	92	7	55	25	28	34	12	1.92
163287--163333	8	6.5	8	79	20	59	21	25	38	14	1.92
163287--163333	15	3.3	15	91	5	71	21	25	38	14	1.92
163315--163391	18	4.6	18	79	15	101	12	19	50	16	1.77
163313--163387	31	2.4	31	93	0	132	16	20	48	16	1.82
163294--163369	13	5.3	13	77	17	71	18	21	44	15	1.86
167218--167263	21	2.2	21	88	0	65	30	28	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168132--168349	31	7.0	31	95	1	375	20	19	22	37	1.94
171502--171547	21	2.2	21	88	0	65	30	28	26	15	1.96
172416--172633	31	7.0	31	95	1	375	20	19	22	37	1.94
173592--173625	2	17.0	2	93	0	59	50	2	0	47	1.16
175114--175161	22	2.2	22	81	3	62	33	29	29	8	1.86
176640--176860	103	2.1	103	92	1	372	26	13	23	36	1.92
176869--176928	23	2.6	23	86	0	84	21	25	28	25	1.99
181394--181609	103	2.1	105	92	2	355	26	13	22	36	1.92
181625--181685	23	2.7	23	79	5	70	21	24	26	27	1.99
188474--188569	21	4.6	21	94	0	138	31	18	27	22	1.97

Tables:   1   2   3