genome.fa.s8318.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008318.1 Hibiscus syriacus cultivar Beakdansim tig00111016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  501449

Tables:   1   2   3   

This is table  2  of  3  ( 285 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236290--236338	21	2.3	21	96	0	89	16	34	18	30	1.93
237040--237082	18	2.5	17	85	7	61	25	4	2	67	1.22
237050--237160	60	1.9	60	83	9	149	35	2	0	61	1.17
237340--237396	20	2.8	19	75	20	53	28	3	0	68	1.06
240373--240426	27	2.0	28	89	7	85	37	9	33	20	1.84
246957--247598	106	6.0	106	86	2	826	35	23	18	22	1.96
246957--247598	211	3.0	212	86	2	889	35	23	18	22	1.96
246957--247598	317	2.0	319	85	4	866	35	23	18	22	1.96
248886--248928	18	2.5	17	85	7	61	25	4	2	67	1.22
248986--249016	2	15.5	2	100	0	62	48	0	0	51	1.00
249424--249519	40	2.5	37	76	18	106	30	5	5	59	1.41
251069--251163	31	3.1	31	78	4	86	36	23	18	21	1.95
252881--252938	3	19.7	3	92	3	100	67	0	31	1	1.01
254159--254212	28	1.9	28	84	0	72	31	0	20	48	1.50
254159--254195	14	2.6	14	100	0	74	29	0	21	48	1.50
254105--254259	78	2.0	78	93	2	267	31	1	18	49	1.56
254669--254704	18	2.0	18	94	0	63	16	2	25	55	1.55
257847--258282	41	10.5	41	80	4	430	35	18	18	28	1.94
257853--258207	125	2.8	125	81	3	358	36	17	17	28	1.92
259413--259477	18	3.9	17	75	17	64	52	4	1	41	1.31
259407--259477	25	2.9	24	77	8	79	53	5	1	39	1.33
260323--260429	18	5.9	18	86	4	144	32	31	17	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260323--260429	54	2.0	54	88	3	162	32	31	17	17	1.94
265510--265547	20	2.0	20	85	10	53	13	34	13	39	1.83
266564--266621	20	2.6	23	86	10	77	32	18	20	27	1.97
270441--270479	21	1.9	20	89	5	60	41	20	0	38	1.53
271407--271454	22	2.4	19	79	10	51	20	20	37	20	1.95
271860--271915	14	4.1	14	81	6	55	55	0	0	44	0.99
290104--290219	57	2.0	57	98	0	223	21	17	28	32	1.96
309524--309568	20	2.2	20	88	7	65	28	20	11	40	1.86
314034--314067	15	2.2	16	89	5	52	79	0	14	5	0.91
315467--315503	17	2.1	19	90	10	60	37	2	10	48	1.52
318327--318565	83	2.9	83	98	0	451	33	20	20	25	1.97
324282--324319	19	2.0	19	94	0	67	47	23	10	18	1.79
324786--324954	46	3.8	46	89	5	233	31	21	7	39	1.82
336007--336038	15	2.1	15	100	0	64	18	6	25	50	1.70
339753--339861	46	2.4	45	89	4	166	40	6	22	31	1.79
340136--340189	22	2.4	23	81	3	65	25	27	11	35	1.90
341261--341320	30	2.0	30	96	0	111	23	18	26	31	1.97
345517--345604	41	2.1	42	87	2	124	20	23	17	38	1.93
345517--345603	21	4.2	21	80	2	86	19	24	17	39	1.92
345600--345693	20	4.7	20	85	2	134	38	19	21	21	1.94
345600--345693	41	2.3	41	88	1	136	38	19	21	21	1.94
346234--346333	14	5.7	19	70	23	94	47	19	23	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346240--346334	33	2.8	33	96	1	172	45	20	23	11	1.83
348056--348619	94	6.1	93	94	2	940	21	12	18	47	1.81
348264--348296	17	1.9	17	88	11	50	24	12	15	48	1.78
348710--348767	19	3.0	19	90	5	98	50	17	22	10	1.76
348792--348886	19	5.2	19	74	14	101	11	22	18	47	1.81
348821--348882	20	3.2	20	88	4	99	11	20	16	51	1.74
349316--349434	42	2.8	42	81	5	107	24	34	17	23	1.96
349368--349434	21	3.2	21	70	4	55	25	32	20	20	1.97
350785--350820	14	2.6	14	95	0	63	33	0	22	44	1.53
350933--350987	14	3.6	14	73	21	56	10	23	20	45	1.82
350928--351005	33	2.4	33	97	0	147	12	23	19	44	1.84
350947--351025	19	4.4	19	72	16	69	13	20	20	45	1.85
350978--351032	19	2.8	19	83	2	65	18	18	21	41	1.90
353557--353608	24	2.2	24	82	0	59	36	21	19	23	1.95
354304--354364	27	2.3	27	100	0	122	22	3	32	40	1.70
354499--354582	41	2.0	42	88	2	125	39	16	23	20	1.92
354499--354582	21	4.0	21	84	3	116	39	16	23	20	1.92
355946--355972	14	1.9	14	100	0	54	40	22	14	22	1.90
355952--356016	22	2.9	22	83	4	76	41	16	20	21	1.90
356120--356148	13	2.1	14	93	6	51	34	13	0	51	1.42
358123--358157	12	3.0	12	91	4	54	54	17	0	28	1.43
361679--361735	22	2.5	22	85	5	78	45	12	17	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361679--361743	22	2.9	22	76	4	67	44	13	18	23	1.85
362711--362764	21	2.6	21	90	0	90	22	25	22	29	1.99
368735--368822	24	3.7	24	76	3	79	48	17	12	21	1.79
379039--379164	59	2.1	59	83	1	153	41	17	13	27	1.87
382303--382419	20	5.9	18	76	16	108	32	26	17	23	1.97
382303--382434	40	3.3	40	85	6	144	34	27	16	21	1.95
382344--382434	40	2.2	41	92	5	150	36	24	17	21	1.95
382306--382419	60	1.9	60	83	7	151	31	26	18	23	1.97
383263--383294	6	5.3	6	92	0	55	0	12	53	34	1.39
383363--383430	21	3.3	21	72	12	68	20	17	26	35	1.95
383378--383452	20	3.7	20	74	10	80	25	21	22	30	1.99
383364--383457	41	2.3	41	90	0	152	23	18	25	32	1.97
387522--387578	18	3.2	18	68	9	53	8	12	24	54	1.65
388900--388938	20	2.0	20	94	0	69	20	10	5	64	1.44
389271--389298	4	7.0	4	100	0	56	25	0	75	0	0.81
393236--393298	13	4.5	15	73	23	57	50	3	0	46	1.17
393465--393712	20	12.2	20	79	14	176	41	23	19	15	1.90
393465--393712	40	6.1	40	78	13	240	41	23	19	15	1.90
393542--393712	40	4.2	40	88	7	254	38	25	19	16	1.93
393808--393840	6	5.5	6	100	0	66	33	51	15	0	1.43
394341--394373	6	5.5	6	100	0	66	0	15	51	33	1.43
394469--394734	60	4.4	60	78	14	251	15	19	22	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394477--394660	40	4.5	41	89	5	250	16	20	24	39	1.92
394469--394736	20	13.2	20	77	10	215	15	19	22	42	1.89
400877--400969	43	2.2	43	86	3	125	52	4	13	29	1.60
400892--401081	43	4.5	42	75	8	136	55	5	12	26	1.58
400991--401099	42	2.6	43	81	8	116	57	3	11	27	1.49
404825--404892	7	9.7	7	100	0	136	0	29	0	70	0.87
405301--405326	3	8.7	3	100	0	52	69	0	0	30	0.89
409725--409776	25	2.0	26	92	7	88	40	19	7	32	1.80
409845--409891	18	2.7	17	83	6	67	29	29	8	31	1.87
410207--410248	22	1.9	22	90	0	66	38	35	0	26	1.57
411678--411703	12	2.2	12	100	0	52	46	11	0	42	1.40
411943--411983	20	2.0	20	100	0	82	19	14	51	14	1.77
418606--418684	23	3.7	21	77	14	81	21	18	35	24	1.96
418900--418945	21	2.1	22	88	4	67	47	6	10	34	1.64
420043--420090	19	2.5	20	82	3	62	29	12	6	52	1.63
421204--421258	3	18.7	3	88	3	85	36	0	0	63	0.95
422490--422597	32	3.4	31	71	15	78	28	2	4	63	1.28
422848--422885	17	2.2	17	90	0	58	42	0	0	57	0.98
423404--423501	21	4.7	21	98	0	187	38	19	23	18	1.93
423491--423563	20	3.7	20	96	0	128	27	27	20	24	1.99
423750--423793	22	2.0	22	95	0	79	20	45	15	18	1.85
424056--424114	20	3.0	20	84	0	73	15	16	22	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424251--424305	25	2.2	24	78	15	58	20	9	18	52	1.71
424969--425014	20	2.3	20	84	0	56	36	23	21	17	1.94
424980--425024	20	2.3	20	88	3	74	37	17	24	20	1.93
424988--425071	19	4.6	19	75	15	79	41	21	22	14	1.89
425078--425157	33	2.4	33	87	0	115	12	16	22	48	1.79
425061--425157	19	5.7	18	67	22	57	13	16	23	46	1.82
425142--425216	20	3.8	20	87	1	98	17	25	22	34	1.96
425582--425671	40	2.2	42	86	4	130	22	40	15	22	1.91
427081--427119	14	2.8	14	84	0	51	35	0	17	46	1.49
427296--427400	40	2.9	34	76	15	102	15	23	23	37	1.93

Tables:   1   2   3