Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008318.1 Hibiscus syriacus cultivar Beakdansim tig00111016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  501449

Tables:   1   2   3   

This is table  3  of  3  ( 285 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
427309--427384
20
3.8
20
92
0
125
15
22
23
38
1.93
427296--427404
34
3.0
34
76
14
110
16
23
22
36
1.94
427607--427683
20
3.8
20
92
0
118
27
20
27
24
1.99
427598--427728
40
3.2
42
81
5
146
22
18
25
33
1.97
427616--427724
20
5.4
20
83
6
130
23
19
27
29
1.98
427714--427765
20
2.5
20
81
3
59
23
23
15
38
1.92
427755--427807
21
2.5
20
82
8
70
33
16
24
24
1.96
427842--427887
19
2.3
20
81
7
58
26
17
28
28
1.98
428182--428215
9
3.8
9
88
0
50
29
0
0
70
0.87
428182--428224
18
2.4
18
84
7
52
25
2
0
72
0.97
429717--429758
7
6.0
7
81
8
50
14
16
14
54
1.71
429717--429758
15
3.0
14
83
10
50
14
16
14
54
1.71
436425--436985
113
5.0
113
88
1
759
37
15
19
28
1.92
437332--437381
3
16.7
3
83
8
66
36
0
0
64
0.94
438605--438712
32
3.4
31
71
15
78
28
2
4
63
1.28
438963--439001
17
2.3
17
86
0
51
46
0
0
53
1.00
439662--439737
21
3.6
21
89
0
116
25
19
31
23
1.98
441503--441572
12
5.8
12
77
12
72
12
14
20
52
1.73
441503--441572
24
2.9
24
84
0
95
12
14
20
52
1.73
446185--446266
12
6.8
12
74
10
78
18
17
18
46
1.85
446171--446279
24
4.5
24
79
8
116
17
17
18
46
1.84
446171--446279
48
2.3
48
84
9
134
17
17
18
46
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
450936--450986
23
2.2
23
85
0
75
29
29
23
17
1.97
451641--451777
63
2.2
64
80
4
152
26
17
21
34
1.96
457880--457939
23
2.6
23
81
0
66
28
23
26
21
1.99
458161--458219
31
1.9
30
83
10
75
35
25
1
37
1.66
458263--458324
25
2.4
25
83
2
79
43
8
12
35
1.73
458601--458708
56
1.9
56
84
1
146
26
15
21
36
1.94
459223--459252
3
9.7
3
92
7
51
66
0
33
0
0.92
463493--463520
14
2.0
14
100
0
56
21
42
28
7
1.79
463644--463728
33
2.6
33
90
0
125
8
37
27
27
1.85
463785--463842
29
2.0
29
86
6
82
20
25
37
15
1.92
467099--467153
27
2.0
28
82
13
69
32
3
7
56
1.44
477195--477246
17
3.2
17
75
10
54
32
3
13
50
1.60
478860--478915
22
2.5
22
88
2
76
35
26
21
16
1.94
482998--483046
24
2.0
26
84
8
66
48
4
12
34
1.59
483487--483518
2
16.0
2
93
0
55
50
3
0
46
1.17
487333--487428
18
5.0
20
82
8
128
25
30
22
21
1.99
487333--487426
38
2.5
38
89
0
152
24
30
22
22
1.99
494064--494109
21
2.2
21
84
0
56
30
30
26
13
1.93
494133--494174
22
2.0
22
85
4
59
28
33
28
9
1.88
495125--495248
31
4.0
31
78
11
128
29
18
20
31
1.96
495235--495337
30
3.4
30
94
0
170
23
20
23
33
1.97
496968--497026
31
1.9
30
86
13
84
38
18
20
22
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
499005--499035
14
2.1
15
94
5
55
25
0
6
67
1.14

Tables:   1   2   3

The End!