genome.fa.s8322.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008322.1 Hibiscus syriacus cultivar Beakdansim tig00111025_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  456513

Tables:   1   2   3   

This is table  3  of  3  ( 293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365122--365155	17	2.0	17	88	0	50	35	2	5	55	1.39
365518--365628	58	1.9	57	80	10	127	26	5	7	61	1.44
377019--377056	8	4.8	8	90	9	60	78	0	10	10	0.95
377025--377055	9	3.6	9	91	8	55	80	0	9	9	0.90
377003--377070	17	3.6	19	80	15	70	75	1	13	10	1.12
377909--378487	136	4.3	136	90	2	891	35	19	21	24	1.96
380068--380101	17	2.0	17	88	0	50	35	2	5	55	1.39
380823--380861	16	2.4	17	82	4	53	25	5	10	58	1.51
381507--381621	41	2.8	41	85	0	167	33	24	17	24	1.96
381508--381621	20	5.6	20	70	12	88	33	24	17	24	1.96
381799--381858	22	2.8	21	77	7	66	21	41	11	25	1.87
382248--382312	33	2.0	33	87	6	96	12	16	23	47	1.80
382308--382356	20	2.5	20	86	0	62	18	16	26	38	1.91
382324--382379	20	2.8	20	91	0	85	10	16	23	50	1.76
382343--382386	20	2.2	20	91	0	70	11	13	20	54	1.69
383428--383726	20	15.9	20	76	13	294	24	17	23	35	1.95
383394--383720	40	8.8	37	73	18	131	23	17	22	36	1.95
383389--383684	94	3.1	94	88	0	414	24	17	22	35	1.95
383469--383726	74	3.5	74	84	4	306	24	16	23	36	1.94
386212--386263	24	2.2	24	82	0	59	36	21	19	23	1.95
387757--387871	60	1.9	60	89	0	176	33	14	15	36	1.89
388423--388473	25	2.0	25	88	0	75	47	5	15	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389252--389276	5	5.0	5	100	0	50	20	0	0	80	0.72
390637--392687	174	11.8	174	93	0	3403	35	13	12	38	1.83
390637--392687	694	3.0	696	94	0	3545	35	13	12	38	1.83
393946--394004	26	2.3	26	97	2	111	30	3	13	52	1.57
398138--398178	20	2.0	20	100	0	82	14	43	17	24	1.86
401639--401680	20	2.1	20	95	0	75	35	19	14	30	1.91
407102--407152	20	2.5	21	84	12	70	50	9	17	21	1.74
417561--417585	12	2.1	12	100	0	50	24	24	28	24	2.00
423823--423877	20	2.8	20	97	0	101	16	29	32	21	1.95
426586--426622	18	2.1	18	89	0	56	27	18	0	54	1.44
434339--434375	18	2.1	18	89	0	56	27	18	0	54	1.44
436636--436702	35	1.9	35	84	6	91	23	14	8	52	1.70
437087--437146	23	2.6	23	82	12	86	10	20	35	35	1.86
437181--437214	13	2.8	12	91	8	59	17	0	29	52	1.45
438143--438186	20	2.2	20	91	0	70	9	13	43	34	1.76
439470--439522	28	1.9	27	92	3	88	49	3	15	32	1.62
439473--439532	28	2.1	28	84	0	75	48	3	16	31	1.63
442360--442471	35	3.2	35	87	3	145	37	0	21	40	1.60
444448--444495	20	2.3	21	85	3	71	50	12	16	20	1.78
445262--445350	23	3.9	23	89	0	115	26	11	20	41	1.86
448315--448351	3	12.7	3	94	5	67	64	0	0	35	0.94
448589--449359	55	14.3	55	79	9	604	26	24	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448800--449359	160	3.5	158	84	7	638	25	24	18	31	1.97
448790--449359	215	2.7	209	84	6	702	25	24	17	31	1.97
449345--449672	153	2.1	156	93	2	565	29	25	16	28	1.96
449345--449672	52	6.4	52	93	2	565	29	25	16	28	1.96
449538--449622	28	3.2	28	63	13	79	32	24	15	27	1.95
449668--450055	55	7.1	55	88	4	608	27	29	14	28	1.96
449665--450055	109	3.6	109	94	2	655	27	28	14	28	1.96
449668--450055	161	2.4	164	89	3	597	27	29	14	28	1.96
451328--451363	14	2.6	14	81	0	54	0	13	2	83	0.76

Tables:   1   2   3

The End!