genome.fa.s8324.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008324.1 Hibiscus syriacus cultivar Beakdansim tig00111028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  430640

Tables:   1   2   3   

This is table  1  of  3  ( 253 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1107--1154	18	2.6	19	86	6	71	31	2	10	56	1.45
1278--2744	197	7.5	198	95	2	2662	35	15	16	32	1.90
1278--2744	391	3.7	392	95	3	2632	35	15	16	32	1.90
1278--2744	588	2.5	589	96	2	2702	35	15	16	32	1.90
4194--4267	6	12.3	6	76	0	58	37	8	35	18	1.81
4197--4267	24	3.0	24	85	0	88	36	8	35	19	1.82
4233--4271	3	13.0	3	83	0	51	38	2	33	25	1.70
4197--4267	12	5.9	12	83	0	79	36	8	35	19	1.82
5721--6200	182	2.6	182	96	1	881	35	14	15	34	1.89
8696--8755	25	2.4	25	88	0	84	33	8	15	43	1.76
9040--9087	21	2.2	23	78	14	57	41	12	10	35	1.77
9105--9168	23	2.8	23	87	0	92	35	6	20	37	1.78
9105--9177	23	3.2	23	82	7	85	34	5	20	39	1.76
9219--9882	332	2.0	331	97	1	1251	42	8	11	38	1.71
14010--14046	18	2.0	19	89	5	58	70	0	0	29	0.88
17702--17746	2	22.5	2	100	0	90	51	0	0	48	1.00
19307--19350	21	2.1	21	100	0	88	29	29	4	36	1.77
22712--22738	3	9.0	3	100	0	54	0	0	33	66	0.92
22944--22979	3	12.0	3	100	0	72	33	0	0	66	0.92
25248--25294	21	2.2	21	84	0	58	68	10	2	19	1.30
25825--26177	43	8.2	43	75	6	268	35	16	22	26	1.95
25823--26165	86	4.0	86	77	1	332	35	15	22	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30310--30580	122	2.2	119	80	7	296	30	21	18	29	1.96
30493--30580	41	2.2	41	83	6	108	35	19	18	27	1.95
30390--30580	40	4.7	41	70	13	133	30	20	18	29	1.97
32212--32326	60	1.9	60	83	3	151	33	16	17	33	1.92
33904--33943	17	2.3	18	83	12	57	50	15	2	32	1.57
35273--35335	15	4.1	15	85	4	90	36	15	14	33	1.88
35274--35333	31	2.0	30	90	3	93	33	16	15	35	1.90
36071--36120	18	2.8	18	78	0	55	18	2	48	32	1.59
36892--36930	15	2.6	16	80	12	55	35	30	2	30	1.71
42648--42686	17	2.2	18	86	4	53	66	5	0	28	1.12
45805--45829	2	12.5	2	100	0	50	48	0	0	52	1.00
52440--52529	26	3.2	26	64	24	65	48	1	8	41	1.41
52450--52547	33	3.2	33	72	19	120	52	1	6	40	1.33
52444--52576	59	2.2	58	84	5	151	52	2	8	36	1.44
56258--56349	21	4.6	20	76	9	89	39	18	23	18	1.92
56255--56349	40	2.3	41	94	1	165	40	17	23	18	1.92
56338--56433	20	4.7	20	79	3	84	34	25	17	22	1.96
56317--56413	42	2.3	41	80	5	106	38	22	18	20	1.94
56381--56433	20	2.7	20	93	0	88	28	28	18	24	1.98
56315--56453	21	6.7	22	74	8	78	36	23	17	22	1.95
59051--59108	20	2.9	21	77	12	59	51	0	1	46	1.11
59066--59242	86	2.0	87	95	3	322	53	7	3	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59357--59390	15	2.2	16	89	5	52	47	5	0	47	1.26
59294--59523	111	2.1	113	84	10	302	38	6	7	47	1.57
62947--63018	24	3.0	24	67	25	62	43	13	5	37	1.68
63066--63108	21	2.0	21	90	0	68	37	0	13	48	1.43
63077--63162	35	2.5	35	88	0	118	36	1	19	43	1.59
67897--67939	19	2.3	19	100	0	86	18	25	9	46	1.79
69304--69349	16	2.9	16	93	0	74	41	6	15	36	1.73
70926--71067	69	2.1	69	100	0	284	22	11	18	47	1.80
74683--75292	203	3.0	203	100	0	1220	33	18	13	34	1.90
76558--76592	18	1.9	18	100	0	70	17	20	11	51	1.75
91676--91706	15	2.1	15	100	0	62	25	19	12	41	1.87
91728--91767	20	2.0	20	100	0	80	45	5	20	30	1.72
91731--91775	20	2.5	18	86	13	58	44	4	20	31	1.71
91920--91994	38	2.0	37	84	5	98	48	4	1	46	1.29
100085--100455	185	2.0	184	92	1	609	41	3	9	45	1.54
113698--113872	87	2.0	87	96	0	323	30	24	20	24	1.99
131627--131668	13	3.3	13	87	12	61	66	0	2	30	1.04
132290--132816	270	2.0	262	96	3	964	38	5	7	48	1.54
132913--132950	18	2.1	19	90	5	60	39	2	18	39	1.65
135732--135830	30	3.3	30	66	20	71	27	11	16	45	1.81
147412--147474	33	1.9	33	87	6	92	42	11	22	23	1.85
151170--151218	21	2.5	20	87	9	73	63	18	10	8	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151176--151218	21	2.1	20	95	4	77	65	18	6	9	1.44
154516--154571	28	2.0	28	89	0	85	25	12	25	37	1.91
157100--157136	15	2.5	15	95	0	65	56	0	0	43	0.99
157111--157158	22	2.1	23	85	11	64	60	2	0	37	1.09
160573--160636	27	2.4	27	86	5	94	9	18	28	43	1.81
163627--163657	2	15.5	2	100	0	62	48	0	0	51	1.00
164555--164599	23	2.0	23	100	0	90	48	0	0	51	1.00
167803--167854	22	2.4	22	83	0	68	34	15	25	25	1.95
169422--169460	20	2.0	20	94	0	69	46	25	12	15	1.81
170163--170266	45	2.3	46	86	8	142	29	21	19	29	1.97
173047--173095	21	2.4	20	86	3	62	38	16	22	22	1.92
173087--173241	20	7.7	20	84	4	141	29	25	18	26	1.98
173084--173261	40	4.4	41	80	4	130	32	24	18	25	1.97
173129--173241	40	2.8	40	89	0	163	25	26	19	28	1.99
173395--173428	12	2.9	12	86	4	52	23	41	0	35	1.55
174210--174234	12	2.1	12	100	0	50	72	0	28	0	0.86
176560--176657	19	5.7	18	68	24	77	44	19	24	11	1.83
176560--176653	33	2.8	33	96	0	170	44	19	24	11	1.84
176682--176720	19	2.1	19	100	0	78	10	23	20	46	1.81
176687--176728	19	2.2	19	91	0	66	16	21	16	45	1.86
176693--176736	19	2.3	19	84	0	52	18	20	15	45	1.85
176835--176871	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178562--178747	91	2.0	91	88	7	277	47	18	11	22	1.80
180435--180565	19	7.1	19	78	11	137	46	19	20	12	1.83
180561--180653	33	2.8	33	86	4	116	10	19	24	45	1.82
180591--180659	20	3.8	19	68	26	60	11	21	21	44	1.84
180966--181024	22	2.7	22	72	0	64	20	18	38	22	1.93
181176--181287	20	5.6	20	84	4	82	21	20	20	37	1.94
181168--181425	41	6.3	41	71	11	163	29	18	19	32	1.96
181173--181425	61	4.1	60	71	11	183	29	18	19	32	1.96
181284--181339	20	2.7	21	80	5	69	42	16	21	19	1.89
181277--181349	21	3.5	21	79	3	76	36	17	21	23	1.94
181400--181452	21	2.5	22	81	6	74	35	18	24	20	1.95
185324--185372	25	2.0	25	88	8	73	77	8	4	10	1.10
185505--185569	34	2.0	33	82	11	80	70	4	3	21	1.19
185510--185637	36	3.6	35	75	17	90	71	2	4	21	1.16
185582--185655	32	2.4	31	82	8	80	74	0	4	21	0.98
185605--185675	23	2.9	24	74	19	67	69	1	4	25	1.15
185596--185674	18	4.1	18	73	19	61	72	1	3	22	1.08
185614--185683	25	2.9	23	77	12	61	70	1	4	24	1.14
185729--185769	13	3.2	12	83	10	55	60	0	2	36	1.10
185722--185769	15	3.6	14	78	18	57	58	2	2	37	1.22
185727--185772	15	3.1	15	81	12	58	63	0	2	34	1.07
185750--185801	19	2.7	19	76	11	61	69	0	5	25	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185834--185873	12	3.3	12	85	0	62	55	2	15	27	1.53
187123--187381	110	2.4	107	85	5	353	24	16	23	35	1.95
188110--188276	65	2.5	65	87	4	219	39	8	20	30	1.84
188110--188407	65	4.4	67	75	10	207	39	11	18	30	1.85
188225--188616	36	11.0	36	72	15	271	38	13	19	29	1.89
188261--188538	101	2.7	102	85	3	337	39	12	18	29	1.88
188466--188616	37	3.9	37	78	11	160	37	14	20	27	1.92
188462--188616	79	2.0	80	93	1	267	37	14	20	28	1.91
190072--190205	68	2.0	69	90	1	216	25	13	22	38	1.90
190262--190310	13	3.8	13	82	15	57	2	18	6	73	1.14

Tables:   1   2   3